Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
882 | 3' | -56.3 | NC_000898.1 | + | 7700 | 0.66 | 0.901308 |
Target: 5'- --cUAGAGGGCGGC----GGUGUCUCa -3' miRNA: 3'- cauAUCUCCCGCCGgagcUUACGGGG- -5' |
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882 | 3' | -56.3 | NC_000898.1 | + | 160868 | 0.66 | 0.901308 |
Target: 5'- --cUAGAGGGCGGC----GGUGUCUCa -3' miRNA: 3'- cauAUCUCCCGCCGgagcUUACGGGG- -5' |
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882 | 3' | -56.3 | NC_000898.1 | + | 101152 | 0.7 | 0.696039 |
Target: 5'- -gGUAGAGGGUGGCuCUaaag-GUCCCu -3' miRNA: 3'- caUAUCUCCCGCCG-GAgcuuaCGGGG- -5' |
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882 | 3' | -56.3 | NC_000898.1 | + | 4374 | 0.71 | 0.665748 |
Target: 5'- cGUAUAGgaAGGGUGGCgCgucgCGAA-GUCCCg -3' miRNA: 3'- -CAUAUC--UCCCGCCG-Ga---GCUUaCGGGG- -5' |
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882 | 3' | -56.3 | NC_000898.1 | + | 157541 | 0.71 | 0.665748 |
Target: 5'- cGUAUAGgaAGGGUGGCgCgucgCGAA-GUCCCg -3' miRNA: 3'- -CAUAUC--UCCCGCCG-Ga---GCUUaCGGGG- -5' |
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882 | 3' | -56.3 | NC_000898.1 | + | 3124 | 0.74 | 0.505099 |
Target: 5'- uGUGcGGAGGGCGGCCgCGAccUGCCg- -3' miRNA: 3'- -CAUaUCUCCCGCCGGaGCUu-ACGGgg -5' |
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882 | 3' | -56.3 | NC_000898.1 | + | 156291 | 0.74 | 0.505099 |
Target: 5'- uGUGcGGAGGGCGGCCgCGAccUGCCg- -3' miRNA: 3'- -CAUaUCUCCCGCCGGaGCUu-ACGGgg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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