miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8823 5' -56 NC_002484.1 + 27361 0.66 0.735088
Target:  5'- cCUGCGCgGCaugGCuGGUCAG-CG-CCg -3'
miRNA:   3'- -GACGCGgCGcuaUG-CCAGUCuGCuGG- -5'
8823 5' -56 NC_002484.1 + 4955 0.66 0.703677
Target:  5'- -gGCGCaaccagguCGCGG-AUGGUCAGuCGACg -3'
miRNA:   3'- gaCGCG--------GCGCUaUGCCAGUCuGCUGg -5'
8823 5' -56 NC_002484.1 + 52939 0.66 0.702618
Target:  5'- -aGUGCCGCGGcuugagcuggcugUGCaGcCGGGCGugCa -3'
miRNA:   3'- gaCGCGGCGCU-------------AUGcCaGUCUGCugG- -5'
8823 5' -56 NC_002484.1 + 432 0.66 0.693058
Target:  5'- ---gGCCGaacuucugGCGGUCGGACGGCg -3'
miRNA:   3'- gacgCGGCgcua----UGCCAGUCUGCUGg -5'
8823 5' -56 NC_002484.1 + 36125 0.66 0.693058
Target:  5'- aCUGCGCCG-GAcACcGagagCAGACGACg -3'
miRNA:   3'- -GACGCGGCgCUaUGcCa---GUCUGCUGg -5'
8823 5' -56 NC_002484.1 + 10925 0.67 0.67166
Target:  5'- -cGCGCCGCGAc-CGGgau--CGGCCu -3'
miRNA:   3'- gaCGCGGCGCUauGCCagucuGCUGG- -5'
8823 5' -56 NC_002484.1 + 28281 0.68 0.60692
Target:  5'- gCUGCuaGCaugCGCGAcGCGGUCGG-CGuACCg -3'
miRNA:   3'- -GACG--CG---GCGCUaUGCCAGUCuGC-UGG- -5'
8823 5' -56 NC_002484.1 + 18936 0.68 0.59615
Target:  5'- -cGCGCUG-GAucagUugGGUCGGACGGuCUa -3'
miRNA:   3'- gaCGCGGCgCU----AugCCAGUCUGCU-GG- -5'
8823 5' -56 NC_002484.1 + 51033 0.71 0.442109
Target:  5'- --cUGCCGgGAaGCGGUCGGcGCGAUCg -3'
miRNA:   3'- gacGCGGCgCUaUGCCAGUC-UGCUGG- -5'
8823 5' -56 NC_002484.1 + 51879 0.72 0.378192
Target:  5'- -cGCGCCuugaucucccgGCGGuUGCGGUCGgcGAUGGCCu -3'
miRNA:   3'- gaCGCGG-----------CGCU-AUGCCAGU--CUGCUGG- -5'
8823 5' -56 NC_002484.1 + 17576 1.12 0.000622
Target:  5'- uCUGCGCCGCGAUACGGUCAGACGACCg -3'
miRNA:   3'- -GACGCGGCGCUAUGCCAGUCUGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.