Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 8824 | 3' | -52 | NC_002484.1 | + | 40352 | 0.66 | 0.867284 |
|
Target: 5'- -gGCGU-GUCCAUGAUCUcGCagaaCGACAa -3' miRNA: 3'- cgUGCAgUAGGUACUAGA-CGc---GCUGU- -5' |
|||||||
| 8824 | 3' | -52 | NC_002484.1 | + | 26272 | 0.67 | 0.813868 |
|
Target: 5'- uGC-CGUCcccgAUCCAcagcCUGCGCGACAu -3' miRNA: 3'- -CGuGCAG----UAGGUacuaGACGCGCUGU- -5' |
|||||||
| 8824 | 3' | -52 | NC_002484.1 | + | 12901 | 0.7 | 0.677036 |
|
Target: 5'- uGCugGaUC-UCCA-GGUCUGCGCG-CAg -3' miRNA: 3'- -CGugC-AGuAGGUaCUAGACGCGCuGU- -5' |
|||||||
| 8824 | 3' | -52 | NC_002484.1 | + | 35050 | 0.72 | 0.57621 |
|
Target: 5'- aGUACGUCAUCgCGUacuacgcgGAUggauuccugcugCUGCGCGACAc -3' miRNA: 3'- -CGUGCAGUAG-GUA--------CUA------------GACGCGCUGU- -5' |
|||||||
| 8824 | 3' | -52 | NC_002484.1 | + | 5136 | 0.79 | 0.242116 |
|
Target: 5'- -aGCGUCGUCCAgGAUCUG-GCGACu -3' miRNA: 3'- cgUGCAGUAGGUaCUAGACgCGCUGu -5' |
|||||||
| 8824 | 3' | -52 | NC_002484.1 | + | 17832 | 1.12 | 0.001492 |
|
Target: 5'- aGCACGUCAUCCAUGAUCUGCGCGACAg -3' miRNA: 3'- -CGUGCAGUAGGUACUAGACGCGCUGU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home