miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8827 5' -53.2 NC_002484.1 + 19591 1.13 0.001071
Target:  5'- gCCAGCGCGAUACGGAUCGCGAUCAGCc -3'
miRNA:   3'- -GGUCGCGCUAUGCCUAGCGCUAGUCG- -5'
8827 5' -53.2 NC_002484.1 + 50728 0.77 0.276545
Target:  5'- cCCuGgGCGGUGCGGAUgagaGCGAguUCAGCc -3'
miRNA:   3'- -GGuCgCGCUAUGCCUAg---CGCU--AGUCG- -5'
8827 5' -53.2 NC_002484.1 + 43086 0.72 0.505549
Target:  5'- cCCGGaagGCGAUGCGGccgaaGCGAUCAagGCg -3'
miRNA:   3'- -GGUCg--CGCUAUGCCuag--CGCUAGU--CG- -5'
8827 5' -53.2 NC_002484.1 + 10930 0.72 0.526549
Target:  5'- uCCAGCGCGccGCGac-CGgGAUCGGCc -3'
miRNA:   3'- -GGUCGCGCuaUGCcuaGCgCUAGUCG- -5'
8827 5' -53.2 NC_002484.1 + 4847 0.72 0.537172
Target:  5'- gCCgAGCGCGGcAUGGAUaCGCGAUgCgAGCc -3'
miRNA:   3'- -GG-UCGCGCUaUGCCUA-GCGCUA-G-UCG- -5'
8827 5' -53.2 NC_002484.1 + 49694 0.71 0.55863
Target:  5'- uCCAGCGgGGagGCGGAgCGCu-UCGGCu -3'
miRNA:   3'- -GGUCGCgCUa-UGCCUaGCGcuAGUCG- -5'
8827 5' -53.2 NC_002484.1 + 9752 0.71 0.591237
Target:  5'- cUCAGCGgGGacgcgccaaGGAUCGCGGUaaCAGCg -3'
miRNA:   3'- -GGUCGCgCUaug------CCUAGCGCUA--GUCG- -5'
8827 5' -53.2 NC_002484.1 + 32905 0.71 0.602186
Target:  5'- cUCAGCGCGAcGCcgcccuggccaGGGUCGCGG--AGCu -3'
miRNA:   3'- -GGUCGCGCUaUG-----------CCUAGCGCUagUCG- -5'
8827 5' -53.2 NC_002484.1 + 51031 0.71 0.602186
Target:  5'- gCCGGgaaGCGGU-CGG--CGCGAUCGGCc -3'
miRNA:   3'- -GGUCg--CGCUAuGCCuaGCGCUAGUCG- -5'
8827 5' -53.2 NC_002484.1 + 26047 0.71 0.606574
Target:  5'- gCCAGCGCGAccgauaaagcgcggGCGGAgaUCaCGA-CAGCa -3'
miRNA:   3'- -GGUCGCGCUa-------------UGCCU--AGcGCUaGUCG- -5'
8827 5' -53.2 NC_002484.1 + 8898 0.69 0.689895
Target:  5'- -uGGUGcCGGUACGGGUCGUag-UAGCg -3'
miRNA:   3'- ggUCGC-GCUAUGCCUAGCGcuaGUCG- -5'
8827 5' -53.2 NC_002484.1 + 49781 0.68 0.743245
Target:  5'- gCCAGCGCGAcguccucGAU-GCGAUCAGa -3'
miRNA:   3'- -GGUCGCGCUaugc---CUAgCGCUAGUCg -5'
8827 5' -53.2 NC_002484.1 + 27338 0.68 0.753624
Target:  5'- gCCGGCGUuccgcugGCGGAuguUCGgGAUCuGCu -3'
miRNA:   3'- -GGUCGCGcua----UGCCU---AGCgCUAGuCG- -5'
8827 5' -53.2 NC_002484.1 + 4030 0.68 0.757742
Target:  5'- gCGGCGCGGccgaUGCGGAUUucaucccccgccaugGCGAUgaaagaggCGGCa -3'
miRNA:   3'- gGUCGCGCU----AUGCCUAG---------------CGCUA--------GUCG- -5'
8827 5' -53.2 NC_002484.1 + 18639 0.68 0.772995
Target:  5'- -uGGCGgGAUcUGGAUuugcgugUGCGAUCAGUu -3'
miRNA:   3'- ggUCGCgCUAuGCCUA-------GCGCUAGUCG- -5'
8827 5' -53.2 NC_002484.1 + 5324 0.67 0.783974
Target:  5'- gCCAgGCG-GAUGCGGucgauUCGCuGcUCGGCg -3'
miRNA:   3'- -GGU-CGCgCUAUGCCu----AGCG-CuAGUCG- -5'
8827 5' -53.2 NC_002484.1 + 7200 0.67 0.783974
Target:  5'- gCAGCGgGGcggACGGAUgaGCGAcauccgccguUCGGCu -3'
miRNA:   3'- gGUCGCgCUa--UGCCUAg-CGCU----------AGUCG- -5'
8827 5' -53.2 NC_002484.1 + 16347 0.67 0.793791
Target:  5'- gCCAGCGacuucGCGGAUCGC-AUCgccgAGCu -3'
miRNA:   3'- -GGUCGCgcua-UGCCUAGCGcUAG----UCG- -5'
8827 5' -53.2 NC_002484.1 + 13449 0.67 0.812908
Target:  5'- aCAGCGggccuaCGAUugGGAUUGCag-CGGUg -3'
miRNA:   3'- gGUCGC------GCUAugCCUAGCGcuaGUCG- -5'
8827 5' -53.2 NC_002484.1 + 10376 0.67 0.822187
Target:  5'- -aGGCG-GAUAUGGGaacuguugCGCGgGUCAGCg -3'
miRNA:   3'- ggUCGCgCUAUGCCUa-------GCGC-UAGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.