miRNA display CGI


Results 1 - 8 of 8 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8829 5' -53.3 NC_002484.1 + 10935 0.66 0.795873
Target:  5'- uUCCAUcCAGCGcgccGCGaCCGGGAucggccucGCCGGu -3'
miRNA:   3'- -AGGUA-GUCGUu---CGCaGGCUCU--------UGGUC- -5'
8829 5' -53.3 NC_002484.1 + 36717 0.66 0.785928
Target:  5'- gCCAaCGGCAGGCcgaCGAGcaGGCCAGg -3'
miRNA:   3'- aGGUaGUCGUUCGcagGCUC--UUGGUC- -5'
8829 5' -53.3 NC_002484.1 + 55380 0.67 0.765553
Target:  5'- aUCC-UCGGCGAGCG-CCu-GGAUCAGc -3'
miRNA:   3'- -AGGuAGUCGUUCGCaGGcuCUUGGUC- -5'
8829 5' -53.3 NC_002484.1 + 41899 0.68 0.723202
Target:  5'- --aGUCAuGCGugaaGGCGUCCGAGGAuaucgcCCAGg -3'
miRNA:   3'- aggUAGU-CGU----UCGCAGGCUCUU------GGUC- -5'
8829 5' -53.3 NC_002484.1 + 40589 0.68 0.701417
Target:  5'- aCgGUCAGCGaggggcuguugcGGCGUCUGAGcGACCu- -3'
miRNA:   3'- aGgUAGUCGU------------UCGCAGGCUC-UUGGuc -5'
8829 5' -53.3 NC_002484.1 + 55813 0.7 0.60125
Target:  5'- gUCCGgaacgCAGCAGGgGcUCGAGAACCu- -3'
miRNA:   3'- -AGGUa----GUCGUUCgCaGGCUCUUGGuc -5'
8829 5' -53.3 NC_002484.1 + 22938 0.72 0.441654
Target:  5'- uUCaCAUCAGacaaAGGCGUuuGAGGACCu- -3'
miRNA:   3'- -AG-GUAGUCg---UUCGCAggCUCUUGGuc -5'
8829 5' -53.3 NC_002484.1 + 25006 1.09 0.0016
Target:  5'- aUCCAUCAGCAAGCGUCCGAGAACCAGc -3'
miRNA:   3'- -AGGUAGUCGUUCGCAGGCUCUUGGUC- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.