miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8831 3' -51.2 NC_002484.1 + 8373 0.66 0.909284
Target:  5'- -cCGAUuaccgCGUCAGCGUgcuggagCAGCGCCAg -3'
miRNA:   3'- gcGCUGuua--GUAGUCGUA-------GUCGUGGU- -5'
8831 3' -51.2 NC_002484.1 + 27358 0.66 0.903087
Target:  5'- gCGCGGCAuggcUgGUCAGCGcCGGCGuuCCGc -3'
miRNA:   3'- -GCGCUGUu---AgUAGUCGUaGUCGU--GGU- -5'
8831 3' -51.2 NC_002484.1 + 47111 0.66 0.888476
Target:  5'- aGCGAgcCAAucUCGUCAGCGgugaGGCGCUu -3'
miRNA:   3'- gCGCU--GUU--AGUAGUCGUag--UCGUGGu -5'
8831 3' -51.2 NC_002484.1 + 11521 0.67 0.841767
Target:  5'- aGCGGCAGcgcggugaugccugCcgCAGUggCAGCGCCAa -3'
miRNA:   3'- gCGCUGUUa-------------GuaGUCGuaGUCGUGGU- -5'
8831 3' -51.2 NC_002484.1 + 39849 0.67 0.838128
Target:  5'- uCGaGACGccgaguaacGUgAUCAGCAUCGGCAgCAa -3'
miRNA:   3'- -GCgCUGU---------UAgUAGUCGUAGUCGUgGU- -5'
8831 3' -51.2 NC_002484.1 + 31324 0.67 0.82793
Target:  5'- uGUcaGCAAUCAUCAGUgaaugcggccgguAUCGGUACCGg -3'
miRNA:   3'- gCGc-UGUUAGUAGUCG-------------UAGUCGUGGU- -5'
8831 3' -51.2 NC_002484.1 + 20028 0.68 0.809692
Target:  5'- cCGUGACGGUUAggaacgCAGCAcaCAGCGuCCAu -3'
miRNA:   3'- -GCGCUGUUAGUa-----GUCGUa-GUCGU-GGU- -5'
8831 3' -51.2 NC_002484.1 + 12092 0.68 0.799798
Target:  5'- uCGUGGCGaaGUCGcUCAGCAcgggaaUCAGCGCa- -3'
miRNA:   3'- -GCGCUGU--UAGU-AGUCGU------AGUCGUGgu -5'
8831 3' -51.2 NC_002484.1 + 31892 0.69 0.758458
Target:  5'- uCGCGcaggaGAUCAUCAGCGg-GGCACUg -3'
miRNA:   3'- -GCGCug---UUAGUAGUCGUagUCGUGGu -5'
8831 3' -51.2 NC_002484.1 + 4900 0.69 0.736904
Target:  5'- gGCGACGAUCAggAGCcaccagGGCGCCGc -3'
miRNA:   3'- gCGCUGUUAGUagUCGuag---UCGUGGU- -5'
8831 3' -51.2 NC_002484.1 + 41358 0.7 0.681258
Target:  5'- aCGCGACGAgcuUCGUaCGGCAcggaAGCACUAu -3'
miRNA:   3'- -GCGCUGUU---AGUA-GUCGUag--UCGUGGU- -5'
8831 3' -51.2 NC_002484.1 + 19093 0.71 0.65856
Target:  5'- uCGCGAuagcCGAUCAUCccGGCGcCAGCGCUg -3'
miRNA:   3'- -GCGCU----GUUAGUAG--UCGUaGUCGUGGu -5'
8831 3' -51.2 NC_002484.1 + 4460 0.71 0.612938
Target:  5'- aGCGGagaGGUCAggAGCGaCAGCGCCAg -3'
miRNA:   3'- gCGCUg--UUAGUagUCGUaGUCGUGGU- -5'
8831 3' -51.2 NC_002484.1 + 8738 0.74 0.490706
Target:  5'- uGCGGCAcugaGUCAGCG-CAGCGCCc -3'
miRNA:   3'- gCGCUGUuag-UAGUCGUaGUCGUGGu -5'
8831 3' -51.2 NC_002484.1 + 26411 1.09 0.002379
Target:  5'- gCGCGACAAUCAUCAGCAUCAGCACCAc -3'
miRNA:   3'- -GCGCUGUUAGUAGUCGUAGUCGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.