miRNA display CGI


Results 1 - 8 of 8 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8832 3' -50.7 NC_002484.1 + 32248 0.66 0.930568
Target:  5'- cGCCGUGaaGGAUcACgucaCGGAUGCCGAAUa -3'
miRNA:   3'- -CGGCAC--CUUAcUG----GUCUACGGUUUGa -5'
8832 3' -50.7 NC_002484.1 + 20334 0.66 0.9185
Target:  5'- cGCUgaGUGGAAcuUGGCgAuauauggacGAUGCCAAACg -3'
miRNA:   3'- -CGG--CACCUU--ACUGgU---------CUACGGUUUGa -5'
8832 3' -50.7 NC_002484.1 + 30360 0.66 0.910021
Target:  5'- aGCCGcgcggcucugagggUGGAGUuGCCGGAUGCUcuugugccggaGAACa -3'
miRNA:   3'- -CGGC--------------ACCUUAcUGGUCUACGG-----------UUUGa -5'
8832 3' -50.7 NC_002484.1 + 53986 0.69 0.812881
Target:  5'- aGCCGcGGAAU----AGGUGCCGGACUa -3'
miRNA:   3'- -CGGCaCCUUAcuggUCUACGGUUUGA- -5'
8832 3' -50.7 NC_002484.1 + 42740 0.69 0.803066
Target:  5'- cGCUGUGcGAGUGGCaCGGA--CCGAACa -3'
miRNA:   3'- -CGGCAC-CUUACUG-GUCUacGGUUUGa -5'
8832 3' -50.7 NC_002484.1 + 13589 0.71 0.696391
Target:  5'- cGCCcuucUGGAGUaACCAGGUGCCGGuCUc -3'
miRNA:   3'- -CGGc---ACCUUAcUGGUCUACGGUUuGA- -5'
8832 3' -50.7 NC_002484.1 + 53889 0.73 0.582914
Target:  5'- uGCCGcaugcgugauuUGGAGUGACCGG-UGCUGAAUc -3'
miRNA:   3'- -CGGC-----------ACCUUACUGGUCuACGGUUUGa -5'
8832 3' -50.7 NC_002484.1 + 26763 1.1 0.002426
Target:  5'- aGCCGUGGAAUGACCAGAUGCCAAACUu -3'
miRNA:   3'- -CGGCACCUUACUGGUCUACGGUUUGA- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.