Results 1 - 9 of 9 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 8834 | 3' | -62 | NC_002484.1 | + | 29564 | 0.66 | 0.386072 |
|
Target: 5'- -cGGCgaGGcauaucaaGUGCuCGGCGCucuggacgCCCCGGa -3' miRNA: 3'- guCCGa-CC--------UACG-GCCGCGua------GGGGCC- -5' |
|||||||
| 8834 | 3' | -62 | NC_002484.1 | + | 44403 | 0.67 | 0.352875 |
|
Target: 5'- gCAGGCuuUGGAgaucggaGCCGGCGUAuucauUCCCUc- -3' miRNA: 3'- -GUCCG--ACCUa------CGGCCGCGU-----AGGGGcc -5' |
|||||||
| 8834 | 3' | -62 | NC_002484.1 | + | 1344 | 0.67 | 0.32175 |
|
Target: 5'- uCAGGCUG---GCCGG-GuCAUCCCaCGGa -3' miRNA: 3'- -GUCCGACcuaCGGCCgC-GUAGGG-GCC- -5' |
|||||||
| 8834 | 3' | -62 | NC_002484.1 | + | 53466 | 0.68 | 0.292723 |
|
Target: 5'- aGGGCUGGAUucgaaCCaGCG-AUCUCCGGg -3' miRNA: 3'- gUCCGACCUAc----GGcCGCgUAGGGGCC- -5' |
|||||||
| 8834 | 3' | -62 | NC_002484.1 | + | 27350 | 0.69 | 0.259368 |
|
Target: 5'- -uGGCUGGucagcGCCGGCGU-UCCgCUGGc -3' miRNA: 3'- guCCGACCua---CGGCCGCGuAGG-GGCC- -5' |
|||||||
| 8834 | 3' | -62 | NC_002484.1 | + | 26446 | 0.7 | 0.229181 |
|
Target: 5'- -cGGCUcGGcuuccugccgGCCGGCGCAUCCCa-- -3' miRNA: 3'- guCCGA-CCua--------CGGCCGCGUAGGGgcc -5' |
|||||||
| 8834 | 3' | -62 | NC_002484.1 | + | 36618 | 0.7 | 0.223512 |
|
Target: 5'- -cGGCccuGAUcGCCGGCgGCAUgCCCGGg -3' miRNA: 3'- guCCGac-CUA-CGGCCG-CGUAgGGGCC- -5' |
|||||||
| 8834 | 3' | -62 | NC_002484.1 | + | 17510 | 0.7 | 0.217962 |
|
Target: 5'- aCGGaGCUGGAgGCgCGcGCGCAUCCCg-- -3' miRNA: 3'- -GUC-CGACCUaCG-GC-CGCGUAGGGgcc -5' |
|||||||
| 8834 | 3' | -62 | NC_002484.1 | + | 27909 | 1.09 | 0.000252 |
|
Target: 5'- aCAGGCUGGAUGCCGGCGCAUCCCCGGc -3' miRNA: 3'- -GUCCGACCUACGGCCGCGUAGGGGCC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home