Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
8835 | 5' | -53.3 | NC_002484.1 | + | 52314 | 0.66 | 0.820271 |
Target: 5'- aGUUcGCGCAGCUuggcGCGGuacuCGGCgGUGa -3' miRNA: 3'- -UAGuCGCGUCGA----UGCUuu--GCUGgCAC- -5' |
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8835 | 5' | -53.3 | NC_002484.1 | + | 19238 | 0.66 | 0.791077 |
Target: 5'- gGUCAGCGCAGUggcgUACGGAuaaACCGc- -3' miRNA: 3'- -UAGUCGCGUCG----AUGCUUugcUGGCac -5' |
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8835 | 5' | -53.3 | NC_002484.1 | + | 17578 | 0.66 | 0.780983 |
Target: 5'- uGUCuGCGCcGCgaUACGGucaGACGACCGa- -3' miRNA: 3'- -UAGuCGCGuCG--AUGCU---UUGCUGGCac -5' |
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8835 | 5' | -53.3 | NC_002484.1 | + | 51680 | 0.68 | 0.661975 |
Target: 5'- aAUUAGCGCAGC--CGAGGCGaACCa-- -3' miRNA: 3'- -UAGUCGCGUCGauGCUUUGC-UGGcac -5' |
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8835 | 5' | -53.3 | NC_002484.1 | + | 44475 | 0.7 | 0.58336 |
Target: 5'- -gCGGCGCcgucAGCUAcCGAGACGGCCc-- -3' miRNA: 3'- uaGUCGCG----UCGAU-GCUUUGCUGGcac -5' |
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8835 | 5' | -53.3 | NC_002484.1 | + | 43166 | 0.7 | 0.561136 |
Target: 5'- --gAGCGCcugauGGCUACGGugaucAUGGCCGUGg -3' miRNA: 3'- uagUCGCG-----UCGAUGCUu----UGCUGGCAC- -5' |
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8835 | 5' | -53.3 | NC_002484.1 | + | 33026 | 0.76 | 0.252502 |
Target: 5'- cGUgAGCGCGGCUGCGAggUGAgCGa- -3' miRNA: 3'- -UAgUCGCGUCGAUGCUuuGCUgGCac -5' |
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8835 | 5' | -53.3 | NC_002484.1 | + | 28021 | 1.06 | 0.002458 |
Target: 5'- cAUCAGCGCAGCUACGAAACGACCGUGc -3' miRNA: 3'- -UAGUCGCGUCGAUGCUUUGCUGGCAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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