miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8835 5' -53.3 NC_002484.1 + 52314 0.66 0.820271
Target:  5'- aGUUcGCGCAGCUuggcGCGGuacuCGGCgGUGa -3'
miRNA:   3'- -UAGuCGCGUCGA----UGCUuu--GCUGgCAC- -5'
8835 5' -53.3 NC_002484.1 + 19238 0.66 0.791077
Target:  5'- gGUCAGCGCAGUggcgUACGGAuaaACCGc- -3'
miRNA:   3'- -UAGUCGCGUCG----AUGCUUugcUGGCac -5'
8835 5' -53.3 NC_002484.1 + 17578 0.66 0.780983
Target:  5'- uGUCuGCGCcGCgaUACGGucaGACGACCGa- -3'
miRNA:   3'- -UAGuCGCGuCG--AUGCU---UUGCUGGCac -5'
8835 5' -53.3 NC_002484.1 + 51680 0.68 0.661975
Target:  5'- aAUUAGCGCAGC--CGAGGCGaACCa-- -3'
miRNA:   3'- -UAGUCGCGUCGauGCUUUGC-UGGcac -5'
8835 5' -53.3 NC_002484.1 + 44475 0.7 0.58336
Target:  5'- -gCGGCGCcgucAGCUAcCGAGACGGCCc-- -3'
miRNA:   3'- uaGUCGCG----UCGAU-GCUUUGCUGGcac -5'
8835 5' -53.3 NC_002484.1 + 43166 0.7 0.561136
Target:  5'- --gAGCGCcugauGGCUACGGugaucAUGGCCGUGg -3'
miRNA:   3'- uagUCGCG-----UCGAUGCUu----UGCUGGCAC- -5'
8835 5' -53.3 NC_002484.1 + 33026 0.76 0.252502
Target:  5'- cGUgAGCGCGGCUGCGAggUGAgCGa- -3'
miRNA:   3'- -UAgUCGCGUCGAUGCUuuGCUgGCac -5'
8835 5' -53.3 NC_002484.1 + 28021 1.06 0.002458
Target:  5'- cAUCAGCGCAGCUACGAAACGACCGUGc -3'
miRNA:   3'- -UAGUCGCGUCGAUGCUUUGCUGGCAC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.