miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8837 5' -52.4 NC_002484.1 + 51024 0.66 0.879068
Target:  5'- aGCGGucgGCGCGAUc-GGCCUCA-AGCUu -3'
miRNA:   3'- cUGCU---UGCGCUGuuUCGGAGUgUCGG- -5'
8837 5' -52.4 NC_002484.1 + 42553 0.66 0.87115
Target:  5'- cGAgGAGCGgGAgAAGGCCau-CAGCg -3'
miRNA:   3'- -CUgCUUGCgCUgUUUCGGaguGUCGg -5'
8837 5' -52.4 NC_002484.1 + 21240 0.66 0.87115
Target:  5'- -gUGAGCGCGucauggccaACAGGaucGCCUCggcuaucgagGCAGCCg -3'
miRNA:   3'- cuGCUUGCGC---------UGUUU---CGGAG----------UGUCGG- -5'
8837 5' -52.4 NC_002484.1 + 43416 0.66 0.870343
Target:  5'- cGCGAACGCGAggugagacaugaaCAuAGCagCACuAGCCa -3'
miRNA:   3'- cUGCUUGCGCU-------------GUuUCGgaGUG-UCGG- -5'
8837 5' -52.4 NC_002484.1 + 26163 0.66 0.862973
Target:  5'- cACGAGCGgaaCGGCAGgcAGCCagauccgcgcUCGCGGCa -3'
miRNA:   3'- cUGCUUGC---GCUGUU--UCGG----------AGUGUCGg -5'
8837 5' -52.4 NC_002484.1 + 7190 0.66 0.845879
Target:  5'- gGACGGAUgaGCGACAuccGCCguuCGGCUg -3'
miRNA:   3'- -CUGCUUG--CGCUGUuu-CGGaguGUCGG- -5'
8837 5' -52.4 NC_002484.1 + 33383 0.66 0.840566
Target:  5'- cAUGAGCGCGACAugcucgggcAAGCgCUCggcgagugcaucgaaGCuGCCg -3'
miRNA:   3'- cUGCUUGCGCUGU---------UUCG-GAG---------------UGuCGG- -5'
8837 5' -52.4 NC_002484.1 + 8745 0.66 0.836979
Target:  5'- aGAUcGAUGCGGCAcuGAGUCagCGCAGCg -3'
miRNA:   3'- -CUGcUUGCGCUGU--UUCGGa-GUGUCGg -5'
8837 5' -52.4 NC_002484.1 + 3672 0.66 0.836979
Target:  5'- -cCGAGCGCgGGCGAA-CCUC-CGGCg -3'
miRNA:   3'- cuGCUUGCG-CUGUUUcGGAGuGUCGg -5'
8837 5' -52.4 NC_002484.1 + 29523 0.67 0.827854
Target:  5'- --aGAACGUucugGACAAcGCUUCcgauGCAGCCa -3'
miRNA:   3'- cugCUUGCG----CUGUUuCGGAG----UGUCGG- -5'
8837 5' -52.4 NC_002484.1 + 30852 0.67 0.827854
Target:  5'- cAUGAcCGCGu---GGCCgUCAUAGCCa -3'
miRNA:   3'- cUGCUuGCGCuguuUCGG-AGUGUCGG- -5'
8837 5' -52.4 NC_002484.1 + 48757 0.67 0.818516
Target:  5'- cGGCGAucuugGCGUcGCGGAGCUUCAgGGUa -3'
miRNA:   3'- -CUGCU-----UGCGcUGUUUCGGAGUgUCGg -5'
8837 5' -52.4 NC_002484.1 + 17678 0.67 0.818516
Target:  5'- aGAgGAAUGgGACGAuGUCUCGCGuuGCUa -3'
miRNA:   3'- -CUgCUUGCgCUGUUuCGGAGUGU--CGG- -5'
8837 5' -52.4 NC_002484.1 + 53383 0.67 0.818516
Target:  5'- cGGCaGAUGC--CAGGGCCUCAaAGCCg -3'
miRNA:   3'- -CUGcUUGCGcuGUUUCGGAGUgUCGG- -5'
8837 5' -52.4 NC_002484.1 + 2287 0.67 0.817571
Target:  5'- uGGCGAACGcCGACGccgcaccggaaauGAGCg-CcCAGCCg -3'
miRNA:   3'- -CUGCUUGC-GCUGU-------------UUCGgaGuGUCGG- -5'
8837 5' -52.4 NC_002484.1 + 36669 0.67 0.799241
Target:  5'- cACGAGaaucCGACAAGGCC-CACaagaaAGCCa -3'
miRNA:   3'- cUGCUUgc--GCUGUUUCGGaGUG-----UCGG- -5'
8837 5' -52.4 NC_002484.1 + 39471 0.67 0.789325
Target:  5'- aGAUGGAgcuaGCGACc-GGCUgCGCGGCCa -3'
miRNA:   3'- -CUGCUUg---CGCUGuuUCGGaGUGUCGG- -5'
8837 5' -52.4 NC_002484.1 + 33950 0.67 0.788324
Target:  5'- aGGCGAagaccaaGCGUGACcccGGCCUgcgCACGGCg -3'
miRNA:   3'- -CUGCU-------UGCGCUGuu-UCGGA---GUGUCGg -5'
8837 5' -52.4 NC_002484.1 + 52417 0.68 0.77924
Target:  5'- aGGCGAACuGCGAUAGcuGGCCgaugCcggACAGCa -3'
miRNA:   3'- -CUGCUUG-CGCUGUU--UCGGa---G---UGUCGg -5'
8837 5' -52.4 NC_002484.1 + 35338 0.68 0.77924
Target:  5'- uACGAgcACGCGGCucagugcuaugGAGGCCUUugGGUUu -3'
miRNA:   3'- cUGCU--UGCGCUG-----------UUUCGGAGugUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.