miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8840 3' -59.6 NC_002484.1 + 33253 0.66 0.516655
Target:  5'- gCGCCGCCCU-GGCgCAacccucccuGGCgcaUGAacugGACCCu -3'
miRNA:   3'- -GCGGUGGGAgCCG-GU---------CCG---ACU----UUGGG- -5'
8840 3' -59.6 NC_002484.1 + 27369 0.66 0.496449
Target:  5'- gCGCCACaCCUgcgCGGCauGGCUGGucAGCgCCg -3'
miRNA:   3'- -GCGGUG-GGA---GCCGguCCGACU--UUG-GG- -5'
8840 3' -59.6 NC_002484.1 + 5282 0.66 0.476608
Target:  5'- aCGCCACUCggCGGCgcgUAGGcCUGu-GCCUg -3'
miRNA:   3'- -GCGGUGGGa-GCCG---GUCC-GACuuUGGG- -5'
8840 3' -59.6 NC_002484.1 + 8450 0.67 0.457168
Target:  5'- aGCCGCCCUgccCGccacagauaauCCAGGCcGGAACCUu -3'
miRNA:   3'- gCGGUGGGA---GCc----------GGUCCGaCUUUGGG- -5'
8840 3' -59.6 NC_002484.1 + 1425 0.67 0.438161
Target:  5'- aCGCCgaACgCUUGGCCu-GCUGGAGCUg -3'
miRNA:   3'- -GCGG--UGgGAGCCGGucCGACUUUGGg -5'
8840 3' -59.6 NC_002484.1 + 53672 0.67 0.438161
Target:  5'- uGaCCAUCCUCGGCCGcGUaGucgcAACCCa -3'
miRNA:   3'- gC-GGUGGGAGCCGGUcCGaCu---UUGGG- -5'
8840 3' -59.6 NC_002484.1 + 26543 0.68 0.405125
Target:  5'- uCGUCGCCCuUCcgcagcccagccgcgGGCCAGGCcGgcACCUc -3'
miRNA:   3'- -GCGGUGGG-AG---------------CCGGUCCGaCuuUGGG- -5'
8840 3' -59.6 NC_002484.1 + 25951 0.68 0.374554
Target:  5'- gGCCguaaccaGCCCcCGG-CAGGCUG--GCCCa -3'
miRNA:   3'- gCGG-------UGGGaGCCgGUCCGACuuUGGG- -5'
8840 3' -59.6 NC_002484.1 + 19416 0.69 0.342376
Target:  5'- aGCUACCUgagccaUCuGCgAGGCUGAAAUCUa -3'
miRNA:   3'- gCGGUGGG------AGcCGgUCCGACUUUGGG- -5'
8840 3' -59.6 NC_002484.1 + 44464 0.69 0.334453
Target:  5'- aGCUaccgagacgGCCCUCGaauacggucGCCAuGGCUGAAGCUg -3'
miRNA:   3'- gCGG---------UGGGAGC---------CGGU-CCGACUUUGGg -5'
8840 3' -59.6 NC_002484.1 + 15754 0.7 0.304114
Target:  5'- aGCCGCCCUCuguaGGCCGcaGCgauGACCCc -3'
miRNA:   3'- gCGGUGGGAG----CCGGUc-CGacuUUGGG- -5'
8840 3' -59.6 NC_002484.1 + 25807 0.71 0.262644
Target:  5'- aGCCGCCCUUcaGcGCCAGGCUuucgcGAuaggcauCCCa -3'
miRNA:   3'- gCGGUGGGAG--C-CGGUCCGA-----CUuu-----GGG- -5'
8840 3' -59.6 NC_002484.1 + 5976 0.72 0.225317
Target:  5'- uCGCCACUCUCGGacucguucgcaguCUucugcugugAGGCUGggGCCa -3'
miRNA:   3'- -GCGGUGGGAGCC-------------GG---------UCCGACuuUGGg -5'
8840 3' -59.6 NC_002484.1 + 38212 0.72 0.220207
Target:  5'- uCGCCGCUgugCUCGGCCugccGCgcGAGACCCu -3'
miRNA:   3'- -GCGGUGG---GAGCCGGuc--CGa-CUUUGGG- -5'
8840 3' -59.6 NC_002484.1 + 42190 0.73 0.183758
Target:  5'- aCGCCGCCCU-GGCCAaGCUG--GCCg -3'
miRNA:   3'- -GCGGUGGGAgCCGGUcCGACuuUGGg -5'
8840 3' -59.6 NC_002484.1 + 26585 0.73 0.169836
Target:  5'- uGCCGCCgCUCGGCCAGcaGCgcgcGGACCUu -3'
miRNA:   3'- gCGGUGG-GAGCCGGUC--CGac--UUUGGG- -5'
8840 3' -59.6 NC_002484.1 + 32896 0.78 0.087187
Target:  5'- aCGCCGCCCU-GGCCAGggucgcggagcuugaGCUGAAACUg -3'
miRNA:   3'- -GCGGUGGGAgCCGGUC---------------CGACUUUGGg -5'
8840 3' -59.6 NC_002484.1 + 40162 0.94 0.004955
Target:  5'- cCGCCACCCUaGGCCcGGGCUGAAACCCg -3'
miRNA:   3'- -GCGGUGGGAgCCGG-UCCGACUUUGGG- -5'
8840 3' -59.6 NC_002484.1 + 30778 1.12 0.000244
Target:  5'- cCGCCACCCUCGGCCAGGCUGAAACCCg -3'
miRNA:   3'- -GCGGUGGGAGCCGGUCCGACUUUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.