miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8843 5' -53 NC_002484.1 + 38238 0.66 0.837818
Target:  5'- -cCugGuGAUGCCGGccgGCGCCGAuaucgccGCUg -3'
miRNA:   3'- caGugC-CUACGGCUua-UGCGGUU-------CGA- -5'
8843 5' -53 NC_002484.1 + 26116 0.66 0.829604
Target:  5'- --uGCGGccgguaGUGCCGc--GCGCCGAGCc -3'
miRNA:   3'- cagUGCC------UACGGCuuaUGCGGUUCGa -5'
8843 5' -53 NC_002484.1 + 19465 0.66 0.800996
Target:  5'- cUCACGGAcagaucGCCGAuu-UGCaCAAGCUc -3'
miRNA:   3'- cAGUGCCUa-----CGGCUuauGCG-GUUCGA- -5'
8843 5' -53 NC_002484.1 + 16338 0.67 0.770728
Target:  5'- uUCGCGGAUcGCau----CGCCGAGCUu -3'
miRNA:   3'- cAGUGCCUA-CGgcuuauGCGGUUCGA- -5'
8843 5' -53 NC_002484.1 + 36604 0.78 0.215113
Target:  5'- --gGCGGcAUGCCcgggGAAUGCGCCAAGCa -3'
miRNA:   3'- cagUGCC-UACGG----CUUAUGCGGUUCGa -5'
8843 5' -53 NC_002484.1 + 32233 1.08 0.001985
Target:  5'- cGUCACGGAUGCCGAAUACGCCAAGCUc -3'
miRNA:   3'- -CAGUGCCUACGGCUUAUGCGGUUCGA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.