miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8844 5' -55.9 NC_002484.1 + 53960 0.66 0.709901
Target:  5'- cGGCGUCACGcCCGcAGaGCaaggaGCCGGg -3'
miRNA:   3'- -UCGUAGUGUuGGC-UCgCGgaa--CGGCC- -5'
8844 5' -55.9 NC_002484.1 + 43180 0.66 0.699169
Target:  5'- uGCAgaACGACCggGAGCGCCUgaugGCuaCGGu -3'
miRNA:   3'- uCGUagUGUUGG--CUCGCGGAa---CG--GCC- -5'
8844 5' -55.9 NC_002484.1 + 792 0.66 0.688373
Target:  5'- aGGCcUCGCGgaACCu-GCG-CUUGCCGGu -3'
miRNA:   3'- -UCGuAGUGU--UGGcuCGCgGAACGGCC- -5'
8844 5' -55.9 NC_002484.1 + 26531 0.66 0.677524
Target:  5'- cGCAgCcCAGCCGcGgGCCagGCCGGc -3'
miRNA:   3'- uCGUaGuGUUGGCuCgCGGaaCGGCC- -5'
8844 5' -55.9 NC_002484.1 + 4320 0.67 0.633804
Target:  5'- cGGCAUC-CAuCCG-GCGCUUgGCCaGGa -3'
miRNA:   3'- -UCGUAGuGUuGGCuCGCGGAaCGG-CC- -5'
8844 5' -55.9 NC_002484.1 + 13491 0.67 0.611895
Target:  5'- gAGCGgugaugCcgGCAGCCGaAGCaGCCgccGCCGGg -3'
miRNA:   3'- -UCGUa-----G--UGUUGGC-UCG-CGGaa-CGGCC- -5'
8844 5' -55.9 NC_002484.1 + 49022 0.67 0.590054
Target:  5'- aGGUcgCugAgcACCGGGCGCUUauCCGGg -3'
miRNA:   3'- -UCGuaGugU--UGGCUCGCGGAacGGCC- -5'
8844 5' -55.9 NC_002484.1 + 19301 0.68 0.536208
Target:  5'- cGCAUgCACAugCG-GCGCCccggaguugaUUGCCGc -3'
miRNA:   3'- uCGUA-GUGUugGCuCGCGG----------AACGGCc -5'
8844 5' -55.9 NC_002484.1 + 50175 0.69 0.515131
Target:  5'- cGCAgUCGCAACggcaaacccaaUGGGaaGCCUUGCCGGc -3'
miRNA:   3'- uCGU-AGUGUUG-----------GCUCg-CGGAACGGCC- -5'
8844 5' -55.9 NC_002484.1 + 26127 0.69 0.494398
Target:  5'- cGGCAUCcaacuGCGGCCGguAGUGCCgcgcGCCGa -3'
miRNA:   3'- -UCGUAG-----UGUUGGC--UCGCGGaa--CGGCc -5'
8844 5' -55.9 NC_002484.1 + 54732 0.69 0.484175
Target:  5'- cGGCGau---ACCucGCGCCUUGCCGGc -3'
miRNA:   3'- -UCGUaguguUGGcuCGCGGAACGGCC- -5'
8844 5' -55.9 NC_002484.1 + 14657 0.75 0.219386
Target:  5'- cGCAUC-CGAUaCGGGCGCUcUGCCGGc -3'
miRNA:   3'- uCGUAGuGUUG-GCUCGCGGaACGGCC- -5'
8844 5' -55.9 NC_002484.1 + 10925 0.75 0.21369
Target:  5'- cGCGcCGCGACCGGGaucgGCCUcGCCGGu -3'
miRNA:   3'- uCGUaGUGUUGGCUCg---CGGAaCGGCC- -5'
8844 5' -55.9 NC_002484.1 + 36942 0.79 0.131182
Target:  5'- aAGCggCugAaGCUGAGCGCCUUGCCGc -3'
miRNA:   3'- -UCGuaGugU-UGGCUCGCGGAACGGCc -5'
8844 5' -55.9 NC_002484.1 + 32507 1.1 0.000788
Target:  5'- uAGCAUCACAACCGAGCGCCUUGCCGGu -3'
miRNA:   3'- -UCGUAGUGUUGGCUCGCGGAACGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.