miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8846 3' -58.3 NC_002484.1 + 38838 0.66 0.55357
Target:  5'- cGAGA-CGCUGCggggAGCGCuacAUGCCGUu -3'
miRNA:   3'- -UUCUaGCGACGag--UCGCGc--UGCGGCG- -5'
8846 3' -58.3 NC_002484.1 + 33047 0.66 0.542944
Target:  5'- gAAGAUCaaGCUGCcCacuGGCGUGAgCGCgGCu -3'
miRNA:   3'- -UUCUAG--CGACGaG---UCGCGCU-GCGgCG- -5'
8846 3' -58.3 NC_002484.1 + 18571 0.66 0.532385
Target:  5'- --cGUCGUaGUUCGucGCGCGAacggaCGCCGCg -3'
miRNA:   3'- uucUAGCGaCGAGU--CGCGCU-----GCGGCG- -5'
8846 3' -58.3 NC_002484.1 + 5308 0.66 0.511499
Target:  5'- -cGAuUCGCUGCUCGGCG-GuuaccacuACGCCa- -3'
miRNA:   3'- uuCU-AGCGACGAGUCGCgC--------UGCGGcg -5'
8846 3' -58.3 NC_002484.1 + 41545 0.66 0.510464
Target:  5'- cAAGAUCGgUGUUCAGCG-GAaguggauucagcaUGCCGg -3'
miRNA:   3'- -UUCUAGCgACGAGUCGCgCU-------------GCGGCg -5'
8846 3' -58.3 NC_002484.1 + 15716 0.67 0.490961
Target:  5'- uGGcUCGCacUGCUCaAGCGCG-CGCUGg -3'
miRNA:   3'- uUCuAGCG--ACGAG-UCGCGCuGCGGCg -5'
8846 3' -58.3 NC_002484.1 + 8179 0.68 0.426153
Target:  5'- uGGGUUGC-GCgugucugcacgccacUCAGCGCGAacCGUCGCg -3'
miRNA:   3'- uUCUAGCGaCG---------------AGUCGCGCU--GCGGCG- -5'
8846 3' -58.3 NC_002484.1 + 27355 0.68 0.39481
Target:  5'- cGGcAUgGCUGgUCAGCGCcGGCGuuCCGCu -3'
miRNA:   3'- uUC-UAgCGACgAGUCGCG-CUGC--GGCG- -5'
8846 3' -58.3 NC_002484.1 + 38351 0.68 0.39481
Target:  5'- -cGAcaugCGCcGC-CGGCuCGACGCCGCa -3'
miRNA:   3'- uuCUa---GCGaCGaGUCGcGCUGCGGCG- -5'
8846 3' -58.3 NC_002484.1 + 4947 0.71 0.268562
Target:  5'- cAGGUCGCggaUGgUCAGU-CGACGCUGCg -3'
miRNA:   3'- uUCUAGCG---ACgAGUCGcGCUGCGGCG- -5'
8846 3' -58.3 NC_002484.1 + 28293 0.72 0.230372
Target:  5'- gAAGAggaagcCGCUGCUagcauGCGCGACGCgGUc -3'
miRNA:   3'- -UUCUa-----GCGACGAgu---CGCGCUGCGgCG- -5'
8846 3' -58.3 NC_002484.1 + 43293 0.73 0.213055
Target:  5'- gGAG-UCGCUGCUCGGCgacuGCGAUGuuGa -3'
miRNA:   3'- -UUCuAGCGACGAGUCG----CGCUGCggCg -5'
8846 3' -58.3 NC_002484.1 + 18210 0.75 0.138606
Target:  5'- cAGAacUCGCUGUUCAGCGCGucuAgGCCGg -3'
miRNA:   3'- uUCU--AGCGACGAGUCGCGC---UgCGGCg -5'
8846 3' -58.3 NC_002484.1 + 32916 1.08 0.000523
Target:  5'- gAAGAUCGCUGCUCAGCGCGACGCCGCc -3'
miRNA:   3'- -UUCUAGCGACGAGUCGCGCUGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.