miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8847 5' -62 NC_002484.1 + 37989 0.66 0.386699
Target:  5'- aCGACGguGCU-GCGCUGCgCCUuGCa- -3'
miRNA:   3'- -GUUGCguCGAgCGCGGCG-GGAcCGcu -5'
8847 5' -62 NC_002484.1 + 27359 0.66 0.378142
Target:  5'- -uGCGCGGCauggcuggUCaGCGCCGgcguuCCgCUGGCGGa -3'
miRNA:   3'- guUGCGUCG--------AG-CGCGGC-----GG-GACCGCU- -5'
8847 5' -62 NC_002484.1 + 34742 0.66 0.378142
Target:  5'- gAugGCGgccuGCUCuCGCCaGUCCUGGgGAa -3'
miRNA:   3'- gUugCGU----CGAGcGCGG-CGGGACCgCU- -5'
8847 5' -62 NC_002484.1 + 52310 0.66 0.369713
Target:  5'- -cGCGCAGCUUgGCGCgGUaCUcGGCGGu -3'
miRNA:   3'- guUGCGUCGAG-CGCGgCGgGA-CCGCU- -5'
8847 5' -62 NC_002484.1 + 28019 0.66 0.353244
Target:  5'- uCAGCGCAGCUacgaaacgacCGUGCaccgcauaaaGCCgCUGcGCGAg -3'
miRNA:   3'- -GUUGCGUCGA----------GCGCGg---------CGG-GAC-CGCU- -5'
8847 5' -62 NC_002484.1 + 41680 0.67 0.337301
Target:  5'- ---aGCuGCUCGcCGCCGCgCCcGGCa- -3'
miRNA:   3'- guugCGuCGAGC-GCGGCG-GGaCCGcu -5'
8847 5' -62 NC_002484.1 + 43132 0.67 0.329528
Target:  5'- cCGAcCGCcGUccaUGCGaCGCCCUGGCGAa -3'
miRNA:   3'- -GUU-GCGuCGa--GCGCgGCGGGACCGCU- -5'
8847 5' -62 NC_002484.1 + 26450 0.67 0.329528
Target:  5'- -uGCGCGGCUCGgcuuccUGCCGgCC-GGCGc -3'
miRNA:   3'- guUGCGUCGAGC------GCGGCgGGaCCGCu -5'
8847 5' -62 NC_002484.1 + 51852 0.67 0.329528
Target:  5'- uCGGCGaUGGCcuucCGCGCCGgCUUGGCGu -3'
miRNA:   3'- -GUUGC-GUCGa---GCGCGGCgGGACCGCu -5'
8847 5' -62 NC_002484.1 + 26214 0.67 0.307008
Target:  5'- gCAGCGCGGCaaUCuGC-CCGCCCUGcuccacuacuGCGGc -3'
miRNA:   3'- -GUUGCGUCG--AG-CGcGGCGGGAC----------CGCU- -5'
8847 5' -62 NC_002484.1 + 4030 0.67 0.307008
Target:  5'- gCGGCGCGGCcgaUGCGgauuucaucccCCGCCaUGGCGAu -3'
miRNA:   3'- -GUUGCGUCGa--GCGC-----------GGCGGgACCGCU- -5'
8847 5' -62 NC_002484.1 + 9288 0.67 0.299768
Target:  5'- gUAACGCGGCUCGU-CCGCCCcuccGCu- -3'
miRNA:   3'- -GUUGCGUCGAGCGcGGCGGGac--CGcu -5'
8847 5' -62 NC_002484.1 + 2740 0.68 0.259094
Target:  5'- cCAACGCAGC-CG-GuCUGCCCgcagcgcGGCGAa -3'
miRNA:   3'- -GUUGCGUCGaGCgC-GGCGGGa------CCGCU- -5'
8847 5' -62 NC_002484.1 + 32563 0.69 0.234559
Target:  5'- -uGCGCAccguGCUCGcCGCCGCgCCcGGCa- -3'
miRNA:   3'- guUGCGU----CGAGC-GCGGCG-GGaCCGcu -5'
8847 5' -62 NC_002484.1 + 5159 0.69 0.228738
Target:  5'- uCGAUGUAGCUCugcaaggccgaaGCGUCGUCCaggaucUGGCGAc -3'
miRNA:   3'- -GUUGCGUCGAG------------CGCGGCGGG------ACCGCU- -5'
8847 5' -62 NC_002484.1 + 6021 0.69 0.228163
Target:  5'- gAACGUuguGUUCGUgcagaugGCCGCCCUcugcGGCGAg -3'
miRNA:   3'- gUUGCGu--CGAGCG-------CGGCGGGA----CCGCU- -5'
8847 5' -62 NC_002484.1 + 34132 0.7 0.212005
Target:  5'- -cAC-CAGCUaacaGCGaaucaCCGCCCUGGCGGu -3'
miRNA:   3'- guUGcGUCGAg---CGC-----GGCGGGACCGCU- -5'
8847 5' -62 NC_002484.1 + 42219 0.71 0.161107
Target:  5'- gCAGCGCGaccaccaccgggaccGCgcCGaCGCCGCCCUGGCc- -3'
miRNA:   3'- -GUUGCGU---------------CGa-GC-GCGGCGGGACCGcu -5'
8847 5' -62 NC_002484.1 + 13426 0.72 0.155272
Target:  5'- gCAGCGguGCUCGCaaauGCCGCCagcugGGCc- -3'
miRNA:   3'- -GUUGCguCGAGCG----CGGCGGga---CCGcu -5'
8847 5' -62 NC_002484.1 + 32923 0.74 0.097524
Target:  5'- uCAGCGCgaagaucgcugcucAGCgCGaCGCCGCCCUGGCc- -3'
miRNA:   3'- -GUUGCG--------------UCGaGC-GCGGCGGGACCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.