miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8848 3' -49.8 NC_002484.1 + 31300 0.66 0.950049
Target:  5'- gCCGguaucgGUACCGGCUGG-AGCGAgAUUGCu -3'
miRNA:   3'- -GGUa-----CGUGGUCGAUUgUCGCU-UAGUG- -5'
8848 3' -49.8 NC_002484.1 + 40555 0.66 0.950049
Target:  5'- aCC-UGUucCCGGCUGACAuggGCGAugacggcucugGUCGCg -3'
miRNA:   3'- -GGuACGu-GGUCGAUUGU---CGCU-----------UAGUG- -5'
8848 3' -49.8 NC_002484.1 + 5712 0.66 0.945213
Target:  5'- uCCcgGCcccuuCCAGUUAGCuggcggucAGCGAaccaGUCACg -3'
miRNA:   3'- -GGuaCGu----GGUCGAUUG--------UCGCU----UAGUG- -5'
8848 3' -49.8 NC_002484.1 + 3714 0.66 0.934645
Target:  5'- gCCAUGCAuCUAGCgcuuugGGCGccaGGUCGCa -3'
miRNA:   3'- -GGUACGU-GGUCGauug--UCGC---UUAGUG- -5'
8848 3' -49.8 NC_002484.1 + 7451 0.66 0.928909
Target:  5'- aCCGccGCGCCcacGUUGGCcGCGAAUCAa -3'
miRNA:   3'- -GGUa-CGUGGu--CGAUUGuCGCUUAGUg -5'
8848 3' -49.8 NC_002484.1 + 36503 0.67 0.92287
Target:  5'- uCCAuUGC-CCAGC-GGCAG-GAGUCAUc -3'
miRNA:   3'- -GGU-ACGuGGUCGaUUGUCgCUUAGUG- -5'
8848 3' -49.8 NC_002484.1 + 39409 0.67 0.922249
Target:  5'- aCCAUGCcccuauuGCCgaGGCUAugaccuagaGCGGCGcugguGUCACg -3'
miRNA:   3'- -GGUACG-------UGG--UCGAU---------UGUCGCu----UAGUG- -5'
8848 3' -49.8 NC_002484.1 + 52907 0.67 0.916527
Target:  5'- gCGUGCAcCCAGCaauCAGCGucuaugCGCu -3'
miRNA:   3'- gGUACGU-GGUCGauuGUCGCuua---GUG- -5'
8848 3' -49.8 NC_002484.1 + 6052 0.67 0.909884
Target:  5'- cCCAaagUGCAUCAGCc--CAGgGggUCAg -3'
miRNA:   3'- -GGU---ACGUGGUCGauuGUCgCuuAGUg -5'
8848 3' -49.8 NC_002484.1 + 19077 0.67 0.905753
Target:  5'- uCCcgGCGCCAGCgcugGuggccagggugucuuGCAGCGuccgGUCAa -3'
miRNA:   3'- -GGuaCGUGGUCGa---U---------------UGUCGCu---UAGUg -5'
8848 3' -49.8 NC_002484.1 + 48827 0.68 0.872257
Target:  5'- cCCAUGCggugcuucuGCCGGCgGGCaauggAGCGGAUuCGCg -3'
miRNA:   3'- -GGUACG---------UGGUCGaUUG-----UCGCUUA-GUG- -5'
8848 3' -49.8 NC_002484.1 + 11907 0.68 0.855254
Target:  5'- --uUGCGaagCAGCgggAGCAGCGcAGUCGCa -3'
miRNA:   3'- gguACGUg--GUCGa--UUGUCGC-UUAGUG- -5'
8848 3' -49.8 NC_002484.1 + 38349 0.69 0.846363
Target:  5'- aCAUGCgccGCCGGCUcgacgccGCAGCGGAU-GCg -3'
miRNA:   3'- gGUACG---UGGUCGAu------UGUCGCUUAgUG- -5'
8848 3' -49.8 NC_002484.1 + 11959 0.7 0.788218
Target:  5'- ---cGCGCCAGCggccugGGCGGCG--UCACc -3'
miRNA:   3'- gguaCGUGGUCGa-----UUGUCGCuuAGUG- -5'
8848 3' -49.8 NC_002484.1 + 35618 0.7 0.788218
Target:  5'- aCAUGgACCGcCUGAUuggugAGCGGAUCACc -3'
miRNA:   3'- gGUACgUGGUcGAUUG-----UCGCUUAGUG- -5'
8848 3' -49.8 NC_002484.1 + 16305 0.71 0.734771
Target:  5'- uCCAcgcGCACUGGUUucaGACAGCGAcgCGCc -3'
miRNA:   3'- -GGUa--CGUGGUCGA---UUGUCGCUuaGUG- -5'
8848 3' -49.8 NC_002484.1 + 49578 0.72 0.655561
Target:  5'- gUCA-GUACCAGU--GCGGCGGAUCAg -3'
miRNA:   3'- -GGUaCGUGGUCGauUGUCGCUUAGUg -5'
8848 3' -49.8 NC_002484.1 + 10697 0.77 0.385564
Target:  5'- cCCAgugaagGCGCCAGCUucuuuaAGCGAAUCAa -3'
miRNA:   3'- -GGUa-----CGUGGUCGAuug---UCGCUUAGUg -5'
8848 3' -49.8 NC_002484.1 + 34138 1.12 0.002224
Target:  5'- cCCAUGCACCAGCUAACAGCGAAUCACc -3'
miRNA:   3'- -GGUACGUGGUCGAUUGUCGCUUAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.