Results 1 - 5 of 5 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8850 | 3' | -51.4 | NC_002484.1 | + | 3092 | 0.66 | 0.901054 |
Target: 5'- aGAACcgGGGAUCuuccGGAGUUCaUCgCGcCCGAu -3' miRNA: 3'- -CUUGa-CCUUAG----UCUCAAG-AG-GC-GGCU- -5' |
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8850 | 3' | -51.4 | NC_002484.1 | + | 8819 | 0.66 | 0.893869 |
Target: 5'- -cGCcGGAAUCGGugacgaaacGgcCUCCGCCGAu -3' miRNA: 3'- cuUGaCCUUAGUCu--------CaaGAGGCGGCU- -5' |
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8850 | 3' | -51.4 | NC_002484.1 | + | 44358 | 0.7 | 0.691294 |
Target: 5'- gGAACUGGcucuUCu--GUUCUCCGCCa- -3' miRNA: 3'- -CUUGACCuu--AGucuCAAGAGGCGGcu -5' |
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8850 | 3' | -51.4 | NC_002484.1 | + | 3523 | 0.73 | 0.534172 |
Target: 5'- uGGAUUGGAcgGUgAGAaugUCUCCGCCGGg -3' miRNA: 3'- -CUUGACCU--UAgUCUca-AGAGGCGGCU- -5' |
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8850 | 3' | -51.4 | NC_002484.1 | + | 34995 | 1.09 | 0.00257 |
Target: 5'- gGAACUGGAAUCAGAGUUCUCCGCCGAc -3' miRNA: 3'- -CUUGACCUUAGUCUCAAGAGGCGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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