miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8850 5' -59.1 NC_002484.1 + 52193 0.65 0.544558
Target:  5'- aGCCCucaCGG-AAGCCCUGGgaaacgguaaGCCc -3'
miRNA:   3'- -UGGGug-GCCuUUCGGGACCaag-------CGGc -5'
8850 5' -59.1 NC_002484.1 + 18393 0.66 0.525901
Target:  5'- uAUCCACCGGAAAccGUuccgUCUGGg-CGCCGc -3'
miRNA:   3'- -UGGGUGGCCUUU--CG----GGACCaaGCGGC- -5'
8850 5' -59.1 NC_002484.1 + 3502 0.66 0.50546
Target:  5'- cUCCGCCGGGGAGUUCUggcaGGUUCucuuuCCGg -3'
miRNA:   3'- uGGGUGGCCUUUCGGGA----CCAAGc----GGC- -5'
8850 5' -59.1 NC_002484.1 + 942 0.66 0.494364
Target:  5'- uCCaCGCCGGAcggaaaaccucgaAGGCCUgcuucucggUGGUggCGCCGg -3'
miRNA:   3'- uGG-GUGGCCU-------------UUCGGG---------ACCAa-GCGGC- -5'
8850 5' -59.1 NC_002484.1 + 25838 0.67 0.485368
Target:  5'- aACgCCACC---AGGUCCUGGUUaGCCGg -3'
miRNA:   3'- -UG-GGUGGccuUUCGGGACCAAgCGGC- -5'
8850 5' -59.1 NC_002484.1 + 38198 0.67 0.446385
Target:  5'- gGCCUGCCGcGcGAGaCCCUGGUggugaaccUGCCGc -3'
miRNA:   3'- -UGGGUGGC-CuUUC-GGGACCAa-------GCGGC- -5'
8850 5' -59.1 NC_002484.1 + 38687 0.68 0.418322
Target:  5'- -aUCAUCGGAGcAGCCCUGGaaggaGCCa -3'
miRNA:   3'- ugGGUGGCCUU-UCGGGACCaag--CGGc -5'
8850 5' -59.1 NC_002484.1 + 16555 0.68 0.391359
Target:  5'- uGCCCGCUGacguucuGCCCUGGUUCGa-- -3'
miRNA:   3'- -UGGGUGGCcuuu---CGGGACCAAGCggc -5'
8850 5' -59.1 NC_002484.1 + 37091 0.68 0.391359
Target:  5'- aGCCCguACCaagGGcAAGGCCCUGGccgCGCUGc -3'
miRNA:   3'- -UGGG--UGG---CC-UUUCGGGACCaa-GCGGC- -5'
8850 5' -59.1 NC_002484.1 + 36653 0.69 0.368927
Target:  5'- gGCCCACaaGAaagccaucaacaacgAAGCCCUGGcggcccugaUCGCCGg -3'
miRNA:   3'- -UGGGUGgcCU---------------UUCGGGACCa--------AGCGGC- -5'
8850 5' -59.1 NC_002484.1 + 51976 0.69 0.365555
Target:  5'- -gCCGCUgccgauGGAAAGUUCguaGGUUCGCCGg -3'
miRNA:   3'- ugGGUGG------CCUUUCGGGa--CCAAGCGGC- -5'
8850 5' -59.1 NC_002484.1 + 50750 0.69 0.333018
Target:  5'- uGCCUcggucGCCGGGAccaGGCCCUGGgcggUGCgGa -3'
miRNA:   3'- -UGGG-----UGGCCUU---UCGGGACCaa--GCGgC- -5'
8850 5' -59.1 NC_002484.1 + 34959 1.09 0.000472
Target:  5'- cACCCACCGGAAAGCCCUGGUUCGCCGg -3'
miRNA:   3'- -UGGGUGGCCUUUCGGGACCAAGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.