Results 1 - 6 of 6 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8851 | 3' | -58.5 | NC_002484.1 | + | 41855 | 0.67 | 0.488325 |
Target: 5'- aGCGUGCCggaGGGGugGAUGCucGUCGAGUg -3' miRNA: 3'- cCGUACGGg--CCCC--UUACG--CGGUUCGu -5' |
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8851 | 3' | -58.5 | NC_002484.1 | + | 51803 | 0.67 | 0.478254 |
Target: 5'- aGGCGcaGgCCGGGGAGcacacgcgcUGCcCCAGGCGc -3' miRNA: 3'- -CCGUa-CgGGCCCCUU---------ACGcGGUUCGU- -5' |
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8851 | 3' | -58.5 | NC_002484.1 | + | 38136 | 0.67 | 0.439047 |
Target: 5'- aGGCcggaaGUGCCUGGGG-GUGCGUCGu--- -3' miRNA: 3'- -CCG-----UACGGGCCCCuUACGCGGUucgu -5' |
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8851 | 3' | -58.5 | NC_002484.1 | + | 5263 | 0.69 | 0.358044 |
Target: 5'- aGGCcuGUGCCUGcGGAAUGaUGCCGuGCAg -3' miRNA: 3'- -CCG--UACGGGCcCCUUAC-GCGGUuCGU- -5' |
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8851 | 3' | -58.5 | NC_002484.1 | + | 8722 | 0.69 | 0.349714 |
Target: 5'- cGCAgcGCCCaucGGGGua-GCGUCAAGCAg -3' miRNA: 3'- cCGUa-CGGG---CCCCuuaCGCGGUUCGU- -5' |
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8851 | 3' | -58.5 | NC_002484.1 | + | 36602 | 1.11 | 0.00033 |
Target: 5'- cGGCAUGCCCGGGGAAUGCGCCAAGCAg -3' miRNA: 3'- -CCGUACGGGCCCCUUACGCGGUUCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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