miRNA display CGI


Results 1 - 20 of 23 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8852 3' -57.4 NC_002484.1 + 51185 0.66 0.637425
Target:  5'- gUCGCGGuaaAGCGGCUcaaAAGCUGuGuCGUc -3'
miRNA:   3'- gGGCGCU---UCGCCGAc--UUCGACuC-GCG- -5'
8852 3' -57.4 NC_002484.1 + 34039 0.66 0.626611
Target:  5'- uUCGCGAgAGCGG-UGAGGCaGAuaGCg -3'
miRNA:   3'- gGGCGCU-UCGCCgACUUCGaCUcgCG- -5'
8852 3' -57.4 NC_002484.1 + 43749 0.66 0.615802
Target:  5'- gCCCGCaGAAGCcuaucGAucGCUGAGCGUc -3'
miRNA:   3'- -GGGCG-CUUCGccga-CUu-CGACUCGCG- -5'
8852 3' -57.4 NC_002484.1 + 49030 0.66 0.583493
Target:  5'- aCUCGCGuAGGUcGCUGA-GCaccGGGCGCu -3'
miRNA:   3'- -GGGCGC-UUCGcCGACUuCGa--CUCGCG- -5'
8852 3' -57.4 NC_002484.1 + 27362 0.67 0.562135
Target:  5'- aCCUGCGcGGCauGGCUGGucAGCgccGGCGUu -3'
miRNA:   3'- -GGGCGCuUCG--CCGACU--UCGac-UCGCG- -5'
8852 3' -57.4 NC_002484.1 + 1418 0.67 0.562135
Target:  5'- -aCGCuuGGCcuGCUGGAGCUGGGC-Ca -3'
miRNA:   3'- ggGCGcuUCGc-CGACUUCGACUCGcG- -5'
8852 3' -57.4 NC_002484.1 + 37883 0.67 0.530523
Target:  5'- gCCgGC-AGGCGGCUGccAGCaUGAGgUGCa -3'
miRNA:   3'- -GGgCGcUUCGCCGACu-UCG-ACUC-GCG- -5'
8852 3' -57.4 NC_002484.1 + 24844 0.67 0.520126
Target:  5'- aCCUGCG-GGCGGCUcGccGCUcGGCGg -3'
miRNA:   3'- -GGGCGCuUCGCCGA-CuuCGAcUCGCg -5'
8852 3' -57.4 NC_002484.1 + 16948 0.69 0.440307
Target:  5'- gCCgGCGAAccGuuGCUGuAGUUGAGCGUc -3'
miRNA:   3'- -GGgCGCUU--CgcCGACuUCGACUCGCG- -5'
8852 3' -57.4 NC_002484.1 + 29999 0.69 0.430818
Target:  5'- gCUGCGGagGGUGGCUGAGGCggcaaCGCc -3'
miRNA:   3'- gGGCGCU--UCGCCGACUUCGacuc-GCG- -5'
8852 3' -57.4 NC_002484.1 + 25368 0.69 0.430818
Target:  5'- aCuuGCGAAGCGGCUcGAcacguucauGC-GGGUGCc -3'
miRNA:   3'- -GggCGCUUCGCCGA-CUu--------CGaCUCGCG- -5'
8852 3' -57.4 NC_002484.1 + 11908 0.69 0.42145
Target:  5'- aUUGCGAAGCaGCgGGAGC--AGCGCa -3'
miRNA:   3'- gGGCGCUUCGcCGaCUUCGacUCGCG- -5'
8852 3' -57.4 NC_002484.1 + 41746 0.7 0.403088
Target:  5'- aCCGCGcgcuGGCgauGGCUGuuGCUGA-CGCa -3'
miRNA:   3'- gGGCGCu---UCG---CCGACuuCGACUcGCG- -5'
8852 3' -57.4 NC_002484.1 + 43087 0.7 0.394099
Target:  5'- uCCCggaagGCGAuGCGGCcGAAGCgaucaaGGCGCu -3'
miRNA:   3'- -GGG-----CGCUuCGCCGaCUUCGac----UCGCG- -5'
8852 3' -57.4 NC_002484.1 + 36982 0.71 0.35115
Target:  5'- gCCCGCG-AGCaGaaGGAGCgcgagGAGCGUa -3'
miRNA:   3'- -GGGCGCuUCGcCgaCUUCGa----CUCGCG- -5'
8852 3' -57.4 NC_002484.1 + 33144 0.71 0.342969
Target:  5'- --gGCGGAGCGGCcGGAGgUGguGGCGUa -3'
miRNA:   3'- gggCGCUUCGCCGaCUUCgAC--UCGCG- -5'
8852 3' -57.4 NC_002484.1 + 52936 0.72 0.304144
Target:  5'- gCCGCGGcuugAGCuGGCUGugcAGCcGGGCGUg -3'
miRNA:   3'- gGGCGCU----UCG-CCGACu--UCGaCUCGCG- -5'
8852 3' -57.4 NC_002484.1 + 33027 0.72 0.289587
Target:  5'- -gCGUGAGcGCGGCUGcGAGgUGAGCGa -3'
miRNA:   3'- ggGCGCUU-CGCCGAC-UUCgACUCGCg -5'
8852 3' -57.4 NC_002484.1 + 3616 0.72 0.275582
Target:  5'- uCCUGUGGuucuGGCuGGCUGAaccAGUucaUGAGCGCg -3'
miRNA:   3'- -GGGCGCU----UCG-CCGACU---UCG---ACUCGCG- -5'
8852 3' -57.4 NC_002484.1 + 42280 0.74 0.219208
Target:  5'- gCCUGCGc-GCuGCUGAGGCUGAugcuaaGCGCu -3'
miRNA:   3'- -GGGCGCuuCGcCGACUUCGACU------CGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.