Results 1 - 6 of 6 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8856 | 3' | -54.5 | NC_002484.1 | + | 38707 | 0.66 | 0.811011 |
Target: 5'- aCUGC--GACGAGAUCGAaaGGAUc- -3' miRNA: 3'- gGACGacCUGCUCUAGCUgcCCUAcu -5' |
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8856 | 3' | -54.5 | NC_002484.1 | + | 24975 | 0.66 | 0.80158 |
Target: 5'- gCCUGaCcGGAguCGAGAUCGACGGc---- -3' miRNA: 3'- -GGAC-GaCCU--GCUCUAGCUGCCcuacu -5' |
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8856 | 3' | -54.5 | NC_002484.1 | + | 31483 | 0.67 | 0.741705 |
Target: 5'- aUCUGCUGGACGcauAGA---ACGGGAg-- -3' miRNA: 3'- -GGACGACCUGC---UCUagcUGCCCUacu -5' |
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8856 | 3' | -54.5 | NC_002484.1 | + | 24844 | 0.67 | 0.710149 |
Target: 5'- aCCUGC-GGGCGGcucgccGcUCGGCGGGAa-- -3' miRNA: 3'- -GGACGaCCUGCU------CuAGCUGCCCUacu -5' |
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8856 | 3' | -54.5 | NC_002484.1 | + | 39076 | 1.11 | 0.001031 |
Target: 5'- cCCUGCUGGACGAGAUCGACGGGAUGAa -3' miRNA: 3'- -GGACGACCUGCUCUAGCUGCCCUACU- -5' |
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8856 | 3' | -54.5 | NC_002484.1 | + | 29823 | 1.11 | 0.001031 |
Target: 5'- cCCUGCUGGACGAGAUCGACGGGAUGAa -3' miRNA: 3'- -GGACGACCUGCUCUAGCUGCCCUACU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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