miRNA display CGI

Results 1 - 10 of 10 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
8857	3'	-59.5	NC_002484.1	+	40983	0.66	0.526881
	Target:  5'- cGCCGCCg-AGGCCCaGGC----GCUCa -3' miRNA:   3'- -CGGUGGgaUCCGGGcCCGacuuUGGG- -5'
8857	3'	-59.5	NC_002484.1	+	15754	0.66	0.516655
	Target:  5'- aGCCGCCCUcuguAGGCCgcaGCgauGACCCc -3' miRNA:   3'- -CGGUGGGA----UCCGGgccCGacuUUGGG- -5'
8857	3'	-59.5	NC_002484.1	+	8661	0.67	0.457168
	Target:  5'- uCCAUCggAGGaCgCGGGUgGAAGCCCa -3' miRNA:   3'- cGGUGGgaUCC-GgGCCCGaCUUUGGG- -5'
8857	3'	-59.5	NC_002484.1	+	33252	0.69	0.358625
	Target:  5'- cGCCGCCCUGGcGCaacccuccCUGGcGCaUGAacugGACCCu -3' miRNA:   3'- -CGGUGGGAUC-CG--------GGCC-CG-ACU----UUGGG- -5'
8857	3'	-59.5	NC_002484.1	+	8450	0.69	0.316743
	Target:  5'- aGCCGCCCU--GCCCGccacagauaauccaGGCcGGAACCUu -3' miRNA:   3'- -CGGUGGGAucCGGGC--------------CCGaCUUUGGG- -5'
8857	3'	-59.5	NC_002484.1	+	25836	0.7	0.282778
	Target:  5'- cGCCACCagguccuGGUuagCCGGGgUGAAGCCg -3' miRNA:   3'- -CGGUGGgau----CCG---GGCCCgACUUUGGg -5'
8857	3'	-59.5	NC_002484.1	+	11362	0.72	0.234057
	Target:  5'- aGCguCCCUAGGCugcgugaugccauuaCCGGGCuccaaUGAAaaaGCCCg -3' miRNA:   3'- -CGguGGGAUCCG---------------GGCCCG-----ACUU---UGGG- -5'
8857	3'	-59.5	NC_002484.1	+	32895	0.72	0.224172
	Target:  5'- cGCCGCCCU-GGCCaGGGUcgcggagcuugagcUGAAACUg -3' miRNA:   3'- -CGGUGGGAuCCGGgCCCG--------------ACUUUGGg -5'
8857	3'	-59.5	NC_002484.1	+	30777	0.9	0.010806
	Target:  5'- cGCCACCCUcGGCCa-GGCUGAAACCCg -3' miRNA:   3'- -CGGUGGGAuCCGGgcCCGACUUUGGG- -5'
8857	3'	-59.5	NC_002484.1	+	40161	1.14	0.000182
	Target:  5'- cGCCACCCUAGGCCCGGGCUGAAACCCg -3' miRNA:   3'- -CGGUGGGAUCCGGGCCCGACUUUGGG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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