miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8857 5' -49.9 NC_002484.1 + 33855 0.66 0.936824
Target:  5'- aUGGaCcUCAGCACAGAGAUU-GUCGa -3'
miRNA:   3'- gACCcGaAGUCGUGUUUUUGAuCGGC- -5'
8857 5' -49.9 NC_002484.1 + 35146 0.66 0.936824
Target:  5'- -gGGGUggCAGCAUGAGAACcguacucaaAGCCa -3'
miRNA:   3'- gaCCCGaaGUCGUGUUUUUGa--------UCGGc -5'
8857 5' -49.9 NC_002484.1 + 10102 0.67 0.883282
Target:  5'- -cGGGCUUCuugaAGCACAAAAaaacccGCUcaaGGCgGg -3'
miRNA:   3'- gaCCCGAAG----UCGUGUUUU------UGA---UCGgC- -5'
8857 5' -49.9 NC_002484.1 + 26303 0.68 0.875264
Target:  5'- uUGGGCUcCGGCAUAcu-GCUccgcGGCCu -3'
miRNA:   3'- gACCCGAaGUCGUGUuuuUGA----UCGGc -5'
8857 5' -49.9 NC_002484.1 + 15050 0.68 0.866968
Target:  5'- -aGGGUgcagCGGCcCAAGGAcCUGGCCa -3'
miRNA:   3'- gaCCCGaa--GUCGuGUUUUU-GAUCGGc -5'
8857 5' -49.9 NC_002484.1 + 35306 0.68 0.853139
Target:  5'- uUGGGUUUCggAGCGCGAgugGAucgacuuccucggcuACUGGCCa -3'
miRNA:   3'- gACCCGAAG--UCGUGUU---UU---------------UGAUCGGc -5'
8857 5' -49.9 NC_002484.1 + 30151 0.69 0.791713
Target:  5'- aUGGGCUaugcgUCAcGCcaucgGCGAAGACaGGCCGa -3'
miRNA:   3'- gACCCGA-----AGU-CG-----UGUUUUUGaUCGGC- -5'
8857 5' -49.9 NC_002484.1 + 25322 0.71 0.704816
Target:  5'- aUGGGCUUCAGCGC-----UUGGCUc -3'
miRNA:   3'- gACCCGAAGUCGUGuuuuuGAUCGGc -5'
8857 5' -49.9 NC_002484.1 + 5381 0.78 0.317187
Target:  5'- aUGGGgUUgAGCACGAuaccGCUGGCCGg -3'
miRNA:   3'- gACCCgAAgUCGUGUUuu--UGAUCGGC- -5'
8857 5' -49.9 NC_002484.1 + 30743 1.1 0.002578
Target:  5'- gCUGGGCUUCAGCACAAAAACUAGCCGa -3'
miRNA:   3'- -GACCCGAAGUCGUGUUUUUGAUCGGC- -5'
8857 5' -49.9 NC_002484.1 + 40126 1.1 0.002578
Target:  5'- gCUGGGCUUCAGCACAAAAACUAGCCGa -3'
miRNA:   3'- -GACCCGAAGUCGUGUUUUUGAUCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.