miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8860 5' -63.7 NC_002484.1 + 38834 0.66 0.371153
Target:  5'- aCGCUGCgGGGAgCGCuacaugccguucaaGCCGAgGUCGa -3'
miRNA:   3'- gGUGGUGgCCCUgGCG--------------CGGCUgCGGC- -5'
8860 5' -63.7 NC_002484.1 + 3893 0.66 0.365522
Target:  5'- gUCGCCGCCGGGGCUGU--UGAUGUUc -3'
miRNA:   3'- -GGUGGUGGCCCUGGCGcgGCUGCGGc -5'
8860 5' -63.7 NC_002484.1 + 5256 0.66 0.357579
Target:  5'- -uGCCugCGGaaugauGCCGUGCagauuGGCGCCGg -3'
miRNA:   3'- ggUGGugGCCc-----UGGCGCGg----CUGCGGC- -5'
8860 5' -63.7 NC_002484.1 + 10330 0.66 0.34206
Target:  5'- aCGCCugucCCGGcgugcgcaGGCCGCGCagguaGCGCCGa -3'
miRNA:   3'- gGUGGu---GGCC--------CUGGCGCGgc---UGCGGC- -5'
8860 5' -63.7 NC_002484.1 + 38345 0.67 0.327033
Target:  5'- gCGCCGCCGGcucgacGCCGCaGCgGAUGCg- -3'
miRNA:   3'- gGUGGUGGCCc-----UGGCG-CGgCUGCGgc -5'
8860 5' -63.7 NC_002484.1 + 38245 0.67 0.319705
Target:  5'- uCgACgACCuGGugauGCCG-GCCGGCGCCGa -3'
miRNA:   3'- -GgUGgUGGcCC----UGGCgCGGCUGCGGC- -5'
8860 5' -63.7 NC_002484.1 + 36883 0.67 0.290955
Target:  5'- aCCGCuCGCCGcGaagcagaagccaaGGCCGcCGCUGAgCGCCGg -3'
miRNA:   3'- -GGUG-GUGGC-C-------------CUGGC-GCGGCU-GCGGC- -5'
8860 5' -63.7 NC_002484.1 + 2296 0.68 0.278333
Target:  5'- aCGCCGCUauGGcGAa--CGCCGACGCCGc -3'
miRNA:   3'- gGUGGUGG--CC-CUggcGCGGCUGCGGC- -5'
8860 5' -63.7 NC_002484.1 + 26086 0.69 0.235588
Target:  5'- aCACCGCCGG--CgGUGCCGAaGCCa -3'
miRNA:   3'- gGUGGUGGCCcuGgCGCGGCUgCGGc -5'
8860 5' -63.7 NC_002484.1 + 13465 0.69 0.22443
Target:  5'- gCCGCCGCCGGGGCCaacaGCgGGC-CUa -3'
miRNA:   3'- -GGUGGUGGCCCUGGcg--CGgCUGcGGc -5'
8860 5' -63.7 NC_002484.1 + 41459 0.69 0.223884
Target:  5'- cUCugCAgCCGGGGCCGUGgcuaucacguaccCCGACGgCGu -3'
miRNA:   3'- -GGugGU-GGCCCUGGCGC-------------GGCUGCgGC- -5'
8860 5' -63.7 NC_002484.1 + 1105 0.7 0.213724
Target:  5'- uCCACCaggGCCgcaugGGGACuCGCGCCGuccccuggguUGCCGa -3'
miRNA:   3'- -GGUGG---UGG-----CCCUG-GCGCGGCu---------GCGGC- -5'
8860 5' -63.7 NC_002484.1 + 16575 0.7 0.19849
Target:  5'- gCCACCagaccgauGCCGGGugCcCGCUGACGUUc -3'
miRNA:   3'- -GGUGG--------UGGCCCugGcGCGGCUGCGGc -5'
8860 5' -63.7 NC_002484.1 + 8002 0.75 0.094272
Target:  5'- uCCACCACCGaaaGGcuugugccACUGCGCCGgGCGCUGg -3'
miRNA:   3'- -GGUGGUGGC---CC--------UGGCGCGGC-UGCGGC- -5'
8860 5' -63.7 NC_002484.1 + 10922 0.75 0.082588
Target:  5'- gCCGCgACCGGGAUCG-GCCu-CGCCGg -3'
miRNA:   3'- -GGUGgUGGCCCUGGCgCGGcuGCGGC- -5'
8860 5' -63.7 NC_002484.1 + 42211 1.09 0.000228
Target:  5'- aCCACCACCGGGACCGCGCCGACGCCGc -3'
miRNA:   3'- -GGUGGUGGCCCUGGCGCGGCUGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.