miRNA display CGI


Results 1 - 20 of 20 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8861 3' -50.9 NC_002484.1 + 24987 0.66 0.936808
Target:  5'- aGAaccAGCGACGccugacCGGAGuCGAGAUCGa -3'
miRNA:   3'- aCU---UCGCUGUaa----GCUUC-GCUCUGGCg -5'
8861 3' -50.9 NC_002484.1 + 5936 0.66 0.931312
Target:  5'- cUGggGCcACuugCGAGGC-AGACgGCg -3'
miRNA:   3'- -ACuuCGcUGuaaGCUUCGcUCUGgCG- -5'
8861 3' -50.9 NC_002484.1 + 40852 0.66 0.925526
Target:  5'- aGAAGCGGCGcuacuucaacaUCGuGGCGAacggcACCGCa -3'
miRNA:   3'- aCUUCGCUGUa----------AGCuUCGCUc----UGGCG- -5'
8861 3' -50.9 NC_002484.1 + 42858 0.66 0.91945
Target:  5'- gGAAGCGAagUAUgggcCGggGUGuGGGCCGa -3'
miRNA:   3'- aCUUCGCU--GUAa---GCuuCGC-UCUGGCg -5'
8861 3' -50.9 NC_002484.1 + 31309 0.66 0.913084
Target:  5'- gUGAAuGCGGCcgguaUCGGuaccggcuggAGCGAGAUUGCu -3'
miRNA:   3'- -ACUU-CGCUGua---AGCU----------UCGCUCUGGCG- -5'
8861 3' -50.9 NC_002484.1 + 18723 0.66 0.90643
Target:  5'- aGAcGCGAgGgucuUUCGAgccgAGCGGGAaaCCGCu -3'
miRNA:   3'- aCUuCGCUgU----AAGCU----UCGCUCU--GGCG- -5'
8861 3' -50.9 NC_002484.1 + 29985 0.67 0.884773
Target:  5'- cUGAGGCGGCAacgcCGggGCcuuGGGAauaucaggcaCCGCu -3'
miRNA:   3'- -ACUUCGCUGUaa--GCuuCG---CUCU----------GGCG- -5'
8861 3' -50.9 NC_002484.1 + 33382 0.68 0.860675
Target:  5'- aUGAGcGCGACAUgcUCGGgcaagcgcucGGCGAGugCa- -3'
miRNA:   3'- -ACUU-CGCUGUA--AGCU----------UCGCUCugGcg -5'
8861 3' -50.9 NC_002484.1 + 16911 0.68 0.852131
Target:  5'- uUGAGGUGAuguCGUUCaccAGGUaGAGGCCGCc -3'
miRNA:   3'- -ACUUCGCU---GUAAGc--UUCG-CUCUGGCG- -5'
8861 3' -50.9 NC_002484.1 + 3986 0.68 0.852131
Target:  5'- aGAGGCGGCAga-GGcAGCcAGGCCGa -3'
miRNA:   3'- aCUUCGCUGUaagCU-UCGcUCUGGCg -5'
8861 3' -50.9 NC_002484.1 + 35367 0.68 0.834326
Target:  5'- -uGAGCGugAUcaUCGcAGGCGAG-CUGCc -3'
miRNA:   3'- acUUCGCugUA--AGC-UUCGCUCuGGCG- -5'
8861 3' -50.9 NC_002484.1 + 37009 0.68 0.825084
Target:  5'- cUGGAGCGACugcgcgcCGAAGCu--GCCGCc -3'
miRNA:   3'- -ACUUCGCUGuaa----GCUUCGcucUGGCG- -5'
8861 3' -50.9 NC_002484.1 + 36944 0.69 0.80597
Target:  5'- cGAAGCGGC---UGAAGCuGAGcgccuuGCCGCc -3'
miRNA:   3'- aCUUCGCUGuaaGCUUCG-CUC------UGGCG- -5'
8861 3' -50.9 NC_002484.1 + 4903 0.69 0.775894
Target:  5'- cGggGCGACGaUCaGGAGCcaccaGGGcGCCGCc -3'
miRNA:   3'- aCuuCGCUGUaAG-CUUCG-----CUC-UGGCG- -5'
8861 3' -50.9 NC_002484.1 + 5688 0.7 0.765541
Target:  5'- cGGucAGCGAaccaGUcacgaaagccUCGggGCGAuaGACCGCg -3'
miRNA:   3'- aCU--UCGCUg---UA----------AGCuuCGCU--CUGGCG- -5'
8861 3' -50.9 NC_002484.1 + 33282 0.7 0.744414
Target:  5'- ---cGCGGCGgaUUUGAAGCGcGACCuGCa -3'
miRNA:   3'- acuuCGCUGU--AAGCUUCGCuCUGG-CG- -5'
8861 3' -50.9 NC_002484.1 + 5022 0.71 0.711859
Target:  5'- aGGAGCGGCAUUguugaCGAAGCcGGuCuCGCg -3'
miRNA:   3'- aCUUCGCUGUAA-----GCUUCGcUCuG-GCG- -5'
8861 3' -50.9 NC_002484.1 + 28424 0.73 0.58743
Target:  5'- uUGAGGCGgccgccgGCAUUCucGGCGugagccgcaGGACCGCg -3'
miRNA:   3'- -ACUUCGC-------UGUAAGcuUCGC---------UCUGGCG- -5'
8861 3' -50.9 NC_002484.1 + 4845 0.75 0.490285
Target:  5'- cGAGcGCGGCAUggauacgCGAuGCGAG-CCGCg -3'
miRNA:   3'- aCUU-CGCUGUAa------GCUuCGCUCuGGCG- -5'
8861 3' -50.9 NC_002484.1 + 42806 1.14 0.001508
Target:  5'- gUGAAGCGACAUUCGAAGCGAGACCGCa -3'
miRNA:   3'- -ACUUCGCUGUAAGCUUCGCUCUGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.