Results 1 - 3 of 3 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8862 | 3' | -55 | NC_002484.1 | + | 36392 | 0.75 | 0.262691 |
Target: 5'- uGGAGCGCCUGAUGGCcaugcacgaACGGaUGcaGUCc -3' miRNA: 3'- -CCUCGCGGACUACCGa--------UGCC-AC--UAGu -5' |
|||||||
8862 | 3' | -55 | NC_002484.1 | + | 10608 | 0.78 | 0.167219 |
Target: 5'- cGGAGCGCUgaAUGGUUGCGGUagaGGUCAc -3' miRNA: 3'- -CCUCGCGGacUACCGAUGCCA---CUAGU- -5' |
|||||||
8862 | 3' | -55 | NC_002484.1 | + | 43168 | 1.1 | 0.000851 |
Target: 5'- gGGAGCGCCUGAUGGCUACGGUGAUCAu -3' miRNA: 3'- -CCUCGCGGACUACCGAUGCCACUAGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home