miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8862 5' -61.5 NC_002484.1 + 13227 0.66 0.394344
Target:  5'- cGUCGGCaagacucuCGCCGUCCAUGaucauCGACGCa-- -3'
miRNA:   3'- -CGGCUG--------GCGGCAGGUAC-----GCUGCGgga -5'
8862 5' -61.5 NC_002484.1 + 5791 0.67 0.377305
Target:  5'- -gCGACCGCCGUCCAaguaugaGCGAacugGCUUg -3'
miRNA:   3'- cgGCUGGCGGCAGGUa------CGCUg---CGGGa -5'
8862 5' -61.5 NC_002484.1 + 13466 0.67 0.377305
Target:  5'- aGCCG-CCGCCGgggCCAacaGCGG-GCCUa -3'
miRNA:   3'- -CGGCuGGCGGCa--GGUa--CGCUgCGGGa -5'
8862 5' -61.5 NC_002484.1 + 51164 0.67 0.352693
Target:  5'- aGCUG--UGUCGUCCAUGCu-CGCCCa -3'
miRNA:   3'- -CGGCugGCGGCAGGUACGcuGCGGGa -5'
8862 5' -61.5 NC_002484.1 + 42624 0.68 0.320932
Target:  5'- uGCUGGCCuGUCGUUCAgcggauagauaauUGCGAguucCGCCCg -3'
miRNA:   3'- -CGGCUGG-CGGCAGGU-------------ACGCU----GCGGGa -5'
8862 5' -61.5 NC_002484.1 + 36917 0.68 0.29979
Target:  5'- cGCCGAaCGCCGagcCCAggaagaacGCGACGCCa- -3'
miRNA:   3'- -CGGCUgGCGGCa--GGUa-------CGCUGCGGga -5'
8862 5' -61.5 NC_002484.1 + 19313 0.7 0.229401
Target:  5'- -gUGGCCGCCuGgcgcaugCaCAUGCGGCGCCCc -3'
miRNA:   3'- cgGCUGGCGG-Ca------G-GUACGCUGCGGGa -5'
8862 5' -61.5 NC_002484.1 + 5142 0.71 0.212792
Target:  5'- gGCCGAagCGUCGUCCAggaucugGCGACuuGCCUUg -3'
miRNA:   3'- -CGGCUg-GCGGCAGGUa------CGCUG--CGGGA- -5'
8862 5' -61.5 NC_002484.1 + 17331 0.86 0.015452
Target:  5'- uGCUGACCGUCGUCCAUGCGcCGCCg- -3'
miRNA:   3'- -CGGCUGGCGGCAGGUACGCuGCGGga -5'
8862 5' -61.5 NC_002484.1 + 43134 1.09 0.000298
Target:  5'- gGCCGACCGCCGUCCAUGCGACGCCCUg -3'
miRNA:   3'- -CGGCUGGCGGCAGGUACGCUGCGGGA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.