Results 1 - 8 of 8 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 8864 | 3' | -45.1 | NC_002484.1 | + | 7577 | 0.66 | 0.99869 |
|
Target: 5'- cGAACGCCu--GUUUCUCGGucagcucaccGCGCa -3' miRNA: 3'- cUUUGUGGuucUAAAGAGUCua--------CGCG- -5' |
|||||||
| 8864 | 3' | -45.1 | NC_002484.1 | + | 40768 | 0.66 | 0.997579 |
|
Target: 5'- cGAAACAUCGguaugaaugugcAGAgaaggaagUCUCAGcacUGCGCg -3' miRNA: 3'- -CUUUGUGGU------------UCUaa------AGAGUCu--ACGCG- -5' |
|||||||
| 8864 | 3' | -45.1 | NC_002484.1 | + | 49461 | 0.67 | 0.996469 |
|
Target: 5'- cGAACGCCAGGg---CUCAGAgaucguaCGCa -3' miRNA: 3'- cUUUGUGGUUCuaaaGAGUCUac-----GCG- -5' |
|||||||
| 8864 | 3' | -45.1 | NC_002484.1 | + | 56266 | 0.68 | 0.987198 |
|
Target: 5'- --uGCGCCGAGAgaacccgacuaUUUCcUAGAUGcCGCa -3' miRNA: 3'- cuuUGUGGUUCU-----------AAAGaGUCUAC-GCG- -5' |
|||||||
| 8864 | 3' | -45.1 | NC_002484.1 | + | 31822 | 0.69 | 0.983177 |
|
Target: 5'- cGAACGCCAuGGGUUgaUCgccaagCAGAugaUGCGCg -3' miRNA: 3'- cUUUGUGGU-UCUAA--AGa-----GUCU---ACGCG- -5' |
|||||||
| 8864 | 3' | -45.1 | NC_002484.1 | + | 5841 | 0.73 | 0.897853 |
|
Target: 5'- --cGCGCCAGGug--CUCGGAUGCa- -3' miRNA: 3'- cuuUGUGGUUCuaaaGAGUCUACGcg -5' |
|||||||
| 8864 | 3' | -45.1 | NC_002484.1 | + | 32719 | 0.74 | 0.83779 |
|
Target: 5'- gGGAGCACCuGGAUgagCUgCGcGAUGCGCu -3' miRNA: 3'- -CUUUGUGGuUCUAaa-GA-GU-CUACGCG- -5' |
|||||||
| 8864 | 3' | -45.1 | NC_002484.1 | + | 44802 | 1.14 | 0.005529 |
|
Target: 5'- aGAAACACCAAGAUUUCUCAGAUGCGCu -3' miRNA: 3'- -CUUUGUGGUUCUAAAGAGUCUACGCG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home