miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8864 5' -53.8 NC_002484.1 + 4880 0.66 0.814826
Target:  5'- aGGGCGCcgccagagccGUCGAuGGAGGUgauggCCGAgCGCg -3'
miRNA:   3'- -UCCGCG----------UAGCU-CCUUUA-----GGUUgGCGg -5'
8864 5' -53.8 NC_002484.1 + 4029 0.66 0.814826
Target:  5'- cGGCGCGgcCGAugcGGAuuucAUCCc-CCGCCa -3'
miRNA:   3'- uCCGCGUa-GCU---CCUu---UAGGuuGGCGG- -5'
8864 5' -53.8 NC_002484.1 + 10637 0.66 0.785767
Target:  5'- -aGCGgAUUu-GGGAAUCCAggcggaACCGCCg -3'
miRNA:   3'- ucCGCgUAGcuCCUUUAGGU------UGGCGG- -5'
8864 5' -53.8 NC_002484.1 + 21210 0.66 0.775741
Target:  5'- cGGC-UAUCGAGG-----CAGCCGCCu -3'
miRNA:   3'- uCCGcGUAGCUCCuuuagGUUGGCGG- -5'
8864 5' -53.8 NC_002484.1 + 10951 0.67 0.744807
Target:  5'- aGGGCGaugGUC-AGGuuuccAUCCAGCgCGCCg -3'
miRNA:   3'- -UCCGCg--UAGcUCCuu---UAGGUUG-GCGG- -5'
8864 5' -53.8 NC_002484.1 + 31845 0.67 0.734249
Target:  5'- gGGGCaGaCAUCcAGGAAAgugCCGAaCGCCa -3'
miRNA:   3'- -UCCG-C-GUAGcUCCUUUa--GGUUgGCGG- -5'
8864 5' -53.8 NC_002484.1 + 36748 0.67 0.723587
Target:  5'- cGGCGCGcCGAaGAAG-CCAcuGCCGCa -3'
miRNA:   3'- uCCGCGUaGCUcCUUUaGGU--UGGCGg -5'
8864 5' -53.8 NC_002484.1 + 11744 0.68 0.68013
Target:  5'- uAGGCGCuacguucUCGAaGAAAUCgGcaagcgcgccACCGCCg -3'
miRNA:   3'- -UCCGCGu------AGCUcCUUUAGgU----------UGGCGG- -5'
8864 5' -53.8 NC_002484.1 + 47482 0.7 0.591666
Target:  5'- aGGGcCGguUCGAcuuGGAAGUCC--UCGCCa -3'
miRNA:   3'- -UCC-GCguAGCU---CCUUUAGGuuGGCGG- -5'
8864 5' -53.8 NC_002484.1 + 11425 0.7 0.590564
Target:  5'- cGGCGC-UCGGcGgcAUCCAugccggccacgaaGCCGCCa -3'
miRNA:   3'- uCCGCGuAGCUcCuuUAGGU-------------UGGCGG- -5'
8864 5' -53.8 NC_002484.1 + 51804 0.7 0.54795
Target:  5'- aAGGCGCAggcCGGGGAGca-CAcgcGCUGCCc -3'
miRNA:   3'- -UCCGCGUa--GCUCCUUuagGU---UGGCGG- -5'
8864 5' -53.8 NC_002484.1 + 19207 0.75 0.311876
Target:  5'- -uGCGCAUCGGGGAGcguagCgAACCGCUc -3'
miRNA:   3'- ucCGCGUAGCUCCUUua---GgUUGGCGG- -5'
8864 5' -53.8 NC_002484.1 + 40970 0.81 0.136591
Target:  5'- cAGGCGCucaggGAGGAAGUCgCAGCCGCg -3'
miRNA:   3'- -UCCGCGuag--CUCCUUUAG-GUUGGCGg -5'
8864 5' -53.8 NC_002484.1 + 44768 1.11 0.001048
Target:  5'- cAGGCGCAUCGAGGAAAUCCAACCGCCc -3'
miRNA:   3'- -UCCGCGUAGCUCCUUUAGGUUGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.