Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8865 | 3' | -51.4 | NC_002484.1 | + | 46015 | 1.12 | 0.001334 |
Target: 5'- aGCACGCCAAACUAACCCAGGCUCAACu -3' miRNA: 3'- -CGUGCGGUUUGAUUGGGUCCGAGUUG- -5' |
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8865 | 3' | -51.4 | NC_002484.1 | + | 32672 | 0.84 | 0.109457 |
Target: 5'- -aACGCCccACcAGCCCAGGCUCAGCa -3' miRNA: 3'- cgUGCGGuuUGaUUGGGUCCGAGUUG- -5' |
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8865 | 3' | -51.4 | NC_002484.1 | + | 34912 | 0.8 | 0.216477 |
Target: 5'- aGCGCcgGCCAGACgacACCCAGGC-CGGCg -3' miRNA: 3'- -CGUG--CGGUUUGau-UGGGUCCGaGUUG- -5' |
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8865 | 3' | -51.4 | NC_002484.1 | + | 42034 | 0.78 | 0.268474 |
Target: 5'- uCAcCGCCccugUAGCCCAGGCUCAGCa -3' miRNA: 3'- cGU-GCGGuuugAUUGGGUCCGAGUUG- -5' |
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8865 | 3' | -51.4 | NC_002484.1 | + | 35786 | 0.77 | 0.305831 |
Target: 5'- aGCGCGCCAAGCgcuCCCAGGagugaaUCAuGCa -3' miRNA: 3'- -CGUGCGGUUUGauuGGGUCCg-----AGU-UG- -5' |
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8865 | 3' | -51.4 | NC_002484.1 | + | 41886 | 0.77 | 0.313764 |
Target: 5'- -gGCGuCCGAGgaUAucGCCCAGGCUCAGCa -3' miRNA: 3'- cgUGC-GGUUUg-AU--UGGGUCCGAGUUG- -5' |
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8865 | 3' | -51.4 | NC_002484.1 | + | 36920 | 0.75 | 0.411132 |
Target: 5'- uGC-CGCCGAACgccgAGCCCAGGaagaacgCGACg -3' miRNA: 3'- -CGuGCGGUUUGa---UUGGGUCCga-----GUUG- -5' |
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8865 | 3' | -51.4 | NC_002484.1 | + | 28607 | 0.73 | 0.481004 |
Target: 5'- cGgGCGCCAcuagcucucccugAGCUAACCC-GGCUgGGCu -3' miRNA: 3'- -CgUGCGGU-------------UUGAUUGGGuCCGAgUUG- -5' |
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8865 | 3' | -51.4 | NC_002484.1 | + | 4213 | 0.72 | 0.580893 |
Target: 5'- uCGCGCCc-GCcGAUCCAGGuCUCGGCg -3' miRNA: 3'- cGUGCGGuuUGaUUGGGUCC-GAGUUG- -5' |
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8865 | 3' | -51.4 | NC_002484.1 | + | 6640 | 0.69 | 0.727813 |
Target: 5'- cCACGCUAGGCggaAugCCuGGCUCGcuGCu -3' miRNA: 3'- cGUGCGGUUUGa--UugGGuCCGAGU--UG- -5' |
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8865 | 3' | -51.4 | NC_002484.1 | + | 52403 | 0.69 | 0.727813 |
Target: 5'- aGCugGCCGAuGCcgGACagcagggaaAGGCUCAGCg -3' miRNA: 3'- -CGugCGGUU-UGa-UUGgg-------UCCGAGUUG- -5' |
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8865 | 3' | -51.4 | NC_002484.1 | + | 51800 | 0.69 | 0.73874 |
Target: 5'- cGCAgGCCGGggagcacacgcGCUGcCCCAGGCgcuGCg -3' miRNA: 3'- -CGUgCGGUU-----------UGAUuGGGUCCGaguUG- -5' |
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8865 | 3' | -51.4 | NC_002484.1 | + | 40983 | 0.69 | 0.73874 |
Target: 5'- cGC-CGCCGAG---GCCCAGGCgcUCAGg -3' miRNA: 3'- -CGuGCGGUUUgauUGGGUCCG--AGUUg -5' |
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8865 | 3' | -51.4 | NC_002484.1 | + | 42175 | 0.69 | 0.760235 |
Target: 5'- aGCugGCCGAACUGgaaaagcaggaGCCgGuGGCUUAc- -3' miRNA: 3'- -CGugCGGUUUGAU-----------UGGgU-CCGAGUug -5' |
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8865 | 3' | -51.4 | NC_002484.1 | + | 32218 | 0.68 | 0.781168 |
Target: 5'- aUACGCCAAGCUcgaagccgAGuCCCAGGCg---- -3' miRNA: 3'- cGUGCGGUUUGA--------UU-GGGUCCGaguug -5' |
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8865 | 3' | -51.4 | NC_002484.1 | + | 35954 | 0.68 | 0.781168 |
Target: 5'- uGC-CGCCAAagaaGCUcauuaccaaAGCUCAGGCgCAGCa -3' miRNA: 3'- -CGuGCGGUU----UGA---------UUGGGUCCGaGUUG- -5' |
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8865 | 3' | -51.4 | NC_002484.1 | + | 54447 | 0.68 | 0.781168 |
Target: 5'- aGCGaaguaGCCAAGgcGGCCCAGGC-CGAg -3' miRNA: 3'- -CGUg----CGGUUUgaUUGGGUCCGaGUUg -5' |
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8865 | 3' | -51.4 | NC_002484.1 | + | 37237 | 0.68 | 0.791391 |
Target: 5'- cGCAagGCCAAACa---CCAGGC-CGGCa -3' miRNA: 3'- -CGUg-CGGUUUGauugGGUCCGaGUUG- -5' |
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8865 | 3' | -51.4 | NC_002484.1 | + | 41744 | 0.68 | 0.801436 |
Target: 5'- cGCGCGCUGGcgauggcuguuGCUGACgCAGGC-CAguGCa -3' miRNA: 3'- -CGUGCGGUU-----------UGAUUGgGUCCGaGU--UG- -5' |
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8865 | 3' | -51.4 | NC_002484.1 | + | 41689 | 0.68 | 0.811291 |
Target: 5'- cGCugGCCGAGCUGcucgccgccgcGCCC-GGCa---- -3' miRNA: 3'- -CGugCGGUUUGAU-----------UGGGuCCGaguug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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