Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8868 | 3' | -55.5 | NC_002484.1 | + | 37467 | 0.66 | 0.706157 |
Target: 5'- -uUCGGCCAGA-CGUcacuacccgcaaggGCAGAgAGgCCg -3' miRNA: 3'- uuAGCUGGUCUaGCG--------------CGUCUgUCgGG- -5' |
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8868 | 3' | -55.5 | NC_002484.1 | + | 19585 | 0.66 | 0.698571 |
Target: 5'- --gCGAUaCGGAUCGCGauCAGcCAGCCa -3' miRNA: 3'- uuaGCUG-GUCUAGCGC--GUCuGUCGGg -5' |
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8868 | 3' | -55.5 | NC_002484.1 | + | 36619 | 0.66 | 0.698571 |
Target: 5'- --gCGGCCcuGAUCGCcgGCGG-CAuGCCCg -3' miRNA: 3'- uuaGCUGGu-CUAGCG--CGUCuGU-CGGG- -5' |
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8868 | 3' | -55.5 | NC_002484.1 | + | 54461 | 0.66 | 0.687679 |
Target: 5'- --aCGAuCCAGGaCGCaGCgaaguagccaAGGCGGCCCa -3' miRNA: 3'- uuaGCU-GGUCUaGCG-CG----------UCUGUCGGG- -5' |
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8868 | 3' | -55.5 | NC_002484.1 | + | 53091 | 0.66 | 0.686586 |
Target: 5'- -cUCGACUcccuucaacugcgGGAUCGCcCAGGCAGUUa -3' miRNA: 3'- uuAGCUGG-------------UCUAGCGcGUCUGUCGGg -5' |
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8868 | 3' | -55.5 | NC_002484.1 | + | 8620 | 0.66 | 0.676733 |
Target: 5'- ---aGACCAGAgcaG-GCAGucgguCAGCCCa -3' miRNA: 3'- uuagCUGGUCUag-CgCGUCu----GUCGGG- -5' |
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8868 | 3' | -55.5 | NC_002484.1 | + | 3598 | 0.67 | 0.63263 |
Target: 5'- --cUGaACCAGuUCaugagcgcgGCGCGGACGGCCUg -3' miRNA: 3'- uuaGC-UGGUCuAG---------CGCGUCUGUCGGG- -5' |
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8868 | 3' | -55.5 | NC_002484.1 | + | 44490 | 0.67 | 0.63263 |
Target: 5'- --aCGGCCAGGacgugggCgGCGCcgucagcuaccgAGACGGCCCu -3' miRNA: 3'- uuaGCUGGUCUa------G-CGCG------------UCUGUCGGG- -5' |
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8868 | 3' | -55.5 | NC_002484.1 | + | 2429 | 0.67 | 0.621578 |
Target: 5'- --gCGACCAGAaCGCGCcaucugucaggcGGAUGGUCUu -3' miRNA: 3'- uuaGCUGGUCUaGCGCG------------UCUGUCGGG- -5' |
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8868 | 3' | -55.5 | NC_002484.1 | + | 26162 | 0.69 | 0.534251 |
Target: 5'- --aCGAgCGGAaCG-GCAGGCAGCCa -3' miRNA: 3'- uuaGCUgGUCUaGCgCGUCUGUCGGg -5' |
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8868 | 3' | -55.5 | NC_002484.1 | + | 54119 | 0.7 | 0.451649 |
Target: 5'- cAUCGACCAG-UCGgGUA-ACAGCCg -3' miRNA: 3'- uUAGCUGGUCuAGCgCGUcUGUCGGg -5' |
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8868 | 3' | -55.5 | NC_002484.1 | + | 26577 | 0.74 | 0.259949 |
Target: 5'- -cUCGGCCAGcagCGCGCGGACcuuGGUCUg -3' miRNA: 3'- uuAGCUGGUCua-GCGCGUCUG---UCGGG- -5' |
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8868 | 3' | -55.5 | NC_002484.1 | + | 49550 | 1.09 | 0.000833 |
Target: 5'- gAAUCGACCAGAUCGCGCAGACAGCCCu -3' miRNA: 3'- -UUAGCUGGUCUAGCGCGUCUGUCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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