miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8869 3' -57.9 NC_002484.1 + 32610 0.66 0.573067
Target:  5'- -aUUCCUcGCGCaGCGCGGcGCUACCg -3'
miRNA:   3'- uaGAGGAcCGCGcCGUGUUcUGGUGG- -5'
8869 3' -57.9 NC_002484.1 + 25873 0.66 0.534681
Target:  5'- uAUCUgCCaGcGCGCGGCgcuccuuaaucugcuGCAAcGCCACCa -3'
miRNA:   3'- -UAGA-GGaC-CGCGCCG---------------UGUUcUGGUGG- -5'
8869 3' -57.9 NC_002484.1 + 3590 0.67 0.499291
Target:  5'- -gUUCaUGaGCGCGGCGCG-GACgGCCu -3'
miRNA:   3'- uaGAGgAC-CGCGCCGUGUuCUGgUGG- -5'
8869 3' -57.9 NC_002484.1 + 53446 0.67 0.478965
Target:  5'- gAUCUCCggguuaUGGCcCGGCGagauGACCACUu -3'
miRNA:   3'- -UAGAGG------ACCGcGCCGUguu-CUGGUGG- -5'
8869 3' -57.9 NC_002484.1 + 42775 0.67 0.468955
Target:  5'- --gUCCUGGaaCGGC-CAGGGCCuGCCg -3'
miRNA:   3'- uagAGGACCgcGCCGuGUUCUGG-UGG- -5'
8869 3' -57.9 NC_002484.1 + 28407 0.68 0.459053
Target:  5'- -aUUCUcGGCGUGaGcCGCAGGACCGCg -3'
miRNA:   3'- uaGAGGaCCGCGC-C-GUGUUCUGGUGg -5'
8869 3' -57.9 NC_002484.1 + 6214 0.68 0.459053
Target:  5'- ---cCCUGGCGaUGGC-CAAGgaaacugcGCCGCCg -3'
miRNA:   3'- uagaGGACCGC-GCCGuGUUC--------UGGUGG- -5'
8869 3' -57.9 NC_002484.1 + 37694 0.69 0.366757
Target:  5'- -cCUgCCUGGgGCGGC-Cu-GAUCACCg -3'
miRNA:   3'- uaGA-GGACCgCGCCGuGuuCUGGUGG- -5'
8869 3' -57.9 NC_002484.1 + 37746 0.69 0.358255
Target:  5'- -cUUCCUcGGCGCccuGGC-CAuGACCGCCu -3'
miRNA:   3'- uaGAGGA-CCGCG---CCGuGUuCUGGUGG- -5'
8869 3' -57.9 NC_002484.1 + 52312 0.71 0.302669
Target:  5'- uUCgcgcagCUUGGCGCGGUACucggcgguGAUCGCCu -3'
miRNA:   3'- uAGa-----GGACCGCGCCGUGuu------CUGGUGG- -5'
8869 3' -57.9 NC_002484.1 + 50909 1.09 0.000487
Target:  5'- cAUCUCCUGGCGCGGCACAAGACCACCu -3'
miRNA:   3'- -UAGAGGACCGCGCCGUGUUCUGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.