Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
887 | 3' | -63 | NC_000898.1 | + | 8252 | 0.66 | 0.584265 |
Target: 5'- gUGCGUGuCUGCGUGUCugcgugugcacgcgUCUGUGGGAg -3' miRNA: 3'- uGCGCGCcGGCGCGCGG--------------AGAUACCCU- -5' |
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887 | 3' | -63 | NC_000898.1 | + | 161419 | 0.66 | 0.584265 |
Target: 5'- gUGCGUGuCUGCGUGUCugcgugugcacgcgUCUGUGGGAg -3' miRNA: 3'- uGCGCGCcGGCGCGCGG--------------AGAUACCCU- -5' |
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887 | 3' | -63 | NC_000898.1 | + | 3384 | 0.66 | 0.577502 |
Target: 5'- -gGCGgaGGCgGUGCGCCag-GUGGGGg -3' miRNA: 3'- ugCGCg-CCGgCGCGCGGagaUACCCU- -5' |
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887 | 3' | -63 | NC_000898.1 | + | 8989 | 0.66 | 0.577502 |
Target: 5'- cACGCGCGGaCCacuCGgGCCggUcgGGGAg -3' miRNA: 3'- -UGCGCGCC-GGc--GCgCGGagAuaCCCU- -5' |
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887 | 3' | -63 | NC_000898.1 | + | 156551 | 0.66 | 0.577502 |
Target: 5'- -gGCGgaGGCgGUGCGCCag-GUGGGGg -3' miRNA: 3'- ugCGCg-CCGgCGCGCGGagaUACCCU- -5' |
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887 | 3' | -63 | NC_000898.1 | + | 162057 | 0.67 | 0.520439 |
Target: 5'- gGCGCGCG--CGCGCGCgUUgg-GGGAu -3' miRNA: 3'- -UGCGCGCcgGCGCGCGgAGauaCCCU- -5' |
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887 | 3' | -63 | NC_000898.1 | + | 8889 | 0.67 | 0.520439 |
Target: 5'- gGCGCGCG--CGCGCGCgUUgg-GGGAu -3' miRNA: 3'- -UGCGCGCcgGCGCGCGgAGauaCCCU- -5' |
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887 | 3' | -63 | NC_000898.1 | + | 3918 | 0.68 | 0.465714 |
Target: 5'- cCGCuGUGGUCGC-CGCCUCUGcGGaGAg -3' miRNA: 3'- uGCG-CGCCGGCGcGCGGAGAUaCC-CU- -5' |
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887 | 3' | -63 | NC_000898.1 | + | 157086 | 0.68 | 0.465714 |
Target: 5'- cCGCuGUGGUCGC-CGCCUCUGcGGaGAg -3' miRNA: 3'- uGCG-CGCCGGCGcGCGGAGAUaCC-CU- -5' |
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887 | 3' | -63 | NC_000898.1 | + | 4751 | 0.71 | 0.336455 |
Target: 5'- aACGgGCGaauccGCCGCGUGCCgcaUCUccGGGAa -3' miRNA: 3'- -UGCgCGC-----CGGCGCGCGG---AGAuaCCCU- -5' |
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887 | 3' | -63 | NC_000898.1 | + | 157919 | 0.71 | 0.336455 |
Target: 5'- aACGgGCGaauccGCCGCGUGCCgcaUCUccGGGAa -3' miRNA: 3'- -UGCgCGC-----CGGCGCGCGG---AGAuaCCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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