miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8871 3' -50.7 NC_002484.1 + 34031 0.66 0.945006
Target:  5'- --aGCGgUGAGGCAGAuagcgaucaaccAAGCCCagGGCg -3'
miRNA:   3'- ggaCGCaGCUUUGUUU------------UUCGGGg-CCG- -5'
8871 3' -50.7 NC_002484.1 + 43276 0.66 0.928514
Target:  5'- aCUGCGaugUUGAucugcacAGCAAAGGGUUCUGGUg -3'
miRNA:   3'- gGACGC---AGCU-------UUGUUUUUCGGGGCCG- -5'
8871 3' -50.7 NC_002484.1 + 5255 0.67 0.917037
Target:  5'- gCCUGCGgaaUGAugccguGCAGAuuGGCgCCGGUc -3'
miRNA:   3'- -GGACGCa--GCUu-----UGUUUu-UCGgGGCCG- -5'
8871 3' -50.7 NC_002484.1 + 41484 0.67 0.913197
Target:  5'- aUCUGCcuGUCGAAgaaaucagcagcucuGCAGccGGGGCCgUGGCu -3'
miRNA:   3'- -GGACG--CAGCUU---------------UGUU--UUUCGGgGCCG- -5'
8871 3' -50.7 NC_002484.1 + 53962 0.67 0.91058
Target:  5'- gCCgGCGUCacgcccgcaGAGCAAGGAGCCggGGCu -3'
miRNA:   3'- -GGaCGCAGc--------UUUGUUUUUCGGggCCG- -5'
8871 3' -50.7 NC_002484.1 + 54554 0.67 0.91058
Target:  5'- aCUGCGaCGcaGAACAAu--GCCCCaccaaaGGCa -3'
miRNA:   3'- gGACGCaGC--UUUGUUuuuCGGGG------CCG- -5'
8871 3' -50.7 NC_002484.1 + 38388 0.67 0.903837
Target:  5'- aCCgGUGgcugCGGGAUAGcu-GCaCCCGGCa -3'
miRNA:   3'- -GGaCGCa---GCUUUGUUuuuCG-GGGCCG- -5'
8871 3' -50.7 NC_002484.1 + 21235 0.67 0.889508
Target:  5'- --cGCGUCauGGccAACAGGAucGCCUCGGCu -3'
miRNA:   3'- ggaCGCAG--CU--UUGUUUUu-CGGGGCCG- -5'
8871 3' -50.7 NC_002484.1 + 41956 0.68 0.881931
Target:  5'- gCUUGCGcCcGAACGAAGAGCgCgGGUu -3'
miRNA:   3'- -GGACGCaGcUUUGUUUUUCGgGgCCG- -5'
8871 3' -50.7 NC_002484.1 + 26330 0.68 0.849012
Target:  5'- aCCgGCGguUCGcugacucagcAGGCGuuGGGCUCCGGCa -3'
miRNA:   3'- -GGaCGC--AGC----------UUUGUuuUUCGGGGCCG- -5'
8871 3' -50.7 NC_002484.1 + 52054 0.69 0.831095
Target:  5'- cCCUGCGUCGAAugcaccucCAGucuuccAGCCUuguuCGGCc -3'
miRNA:   3'- -GGACGCAGCUUu-------GUUuu----UCGGG----GCCG- -5'
8871 3' -50.7 NC_002484.1 + 40909 0.69 0.812304
Target:  5'- -aUGCGguUCGAcACGAAcGGCUuuGGCa -3'
miRNA:   3'- ggACGC--AGCUuUGUUUuUCGGggCCG- -5'
8871 3' -50.7 NC_002484.1 + 10347 0.69 0.812304
Target:  5'- --aGCGUUGAgggucAGCGAcgccuGUCCCGGCg -3'
miRNA:   3'- ggaCGCAGCU-----UUGUUuuu--CGGGGCCG- -5'
8871 3' -50.7 NC_002484.1 + 27362 0.69 0.802607
Target:  5'- aCCUGCG-CGGcauGGCuggucAGCgCCGGCg -3'
miRNA:   3'- -GGACGCaGCU---UUGuuuu-UCGgGGCCG- -5'
8871 3' -50.7 NC_002484.1 + 37981 0.7 0.792724
Target:  5'- gCUGCGcugCGccuuGCAAAcAGCCUCGGUc -3'
miRNA:   3'- gGACGCa--GCuu--UGUUUuUCGGGGCCG- -5'
8871 3' -50.7 NC_002484.1 + 49694 0.7 0.792724
Target:  5'- uCCaGCGggGAGGCGGAgcGCUUCGGCu -3'
miRNA:   3'- -GGaCGCagCUUUGUUUuuCGGGGCCG- -5'
8871 3' -50.7 NC_002484.1 + 41186 0.7 0.762072
Target:  5'- --aGCGUCGAuGGCGGGGAGUUCUGGa -3'
miRNA:   3'- ggaCGCAGCU-UUGUUUUUCGGGGCCg -5'
8871 3' -50.7 NC_002484.1 + 38707 0.71 0.739851
Target:  5'- aCUGCGaCGAGAuCGAAAggaucaucggagcAGCCCUGGa -3'
miRNA:   3'- gGACGCaGCUUU-GUUUU-------------UCGGGGCCg -5'
8871 3' -50.7 NC_002484.1 + 7889 0.73 0.618976
Target:  5'- gCCaugGCGuuUCGAGAUAGGc-GCCCCGGUg -3'
miRNA:   3'- -GGa--CGC--AGCUUUGUUUuuCGGGGCCG- -5'
8871 3' -50.7 NC_002484.1 + 14580 0.74 0.541134
Target:  5'- uCCgGCGUCGAu------GGCCUCGGCa -3'
miRNA:   3'- -GGaCGCAGCUuuguuuuUCGGGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.