miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8873 5' -57.1 NC_002484.1 + 42165 0.66 0.65447
Target:  5'- aCUGGaaaAGCAGGAGcCGGuggcuuacgugcucuUCCGCGAUg -3'
miRNA:   3'- -GGCCg--UCGUCCUCaGCUu--------------GGGCGUUG- -5'
8873 5' -57.1 NC_002484.1 + 24825 0.66 0.653388
Target:  5'- cUCGGCGGgaaaGGGAGUCuuACcuCCGCAGg -3'
miRNA:   3'- -GGCCGUCg---UCCUCAGcuUG--GGCGUUg -5'
8873 5' -57.1 NC_002484.1 + 36978 0.66 0.653388
Target:  5'- gCGaGCAGaAGGAGcgCGAggagcguauuGCCCGCGAa -3'
miRNA:   3'- gGC-CGUCgUCCUCa-GCU----------UGGGCGUUg -5'
8873 5' -57.1 NC_002484.1 + 10257 0.66 0.610066
Target:  5'- gUCGGCAGgGuugccaccGGGGUUGAACgCgGUAGCg -3'
miRNA:   3'- -GGCCGUCgU--------CCUCAGCUUG-GgCGUUG- -5'
8873 5' -57.1 NC_002484.1 + 17391 0.67 0.556385
Target:  5'- aCGGCAGCGGGAuGcCG--UCCGUAAa -3'
miRNA:   3'- gGCCGUCGUCCU-CaGCuuGGGCGUUg -5'
8873 5' -57.1 NC_002484.1 + 11897 0.67 0.545794
Target:  5'- gCGGgAGCAGcGcAGUCGcaucGCUCGCAAUa -3'
miRNA:   3'- gGCCgUCGUC-C-UCAGCu---UGGGCGUUG- -5'
8873 5' -57.1 NC_002484.1 + 26330 0.68 0.523774
Target:  5'- aCCGGCgguucgcugacucAGCAGGcGUUGGGCUC-CGGCa -3'
miRNA:   3'- -GGCCG-------------UCGUCCuCAGCUUGGGcGUUG- -5'
8873 5' -57.1 NC_002484.1 + 2755 0.68 0.508256
Target:  5'- aUGGaAGCAGGAaguccaacgcagccgGUCu-GCCCGCAGCg -3'
miRNA:   3'- gGCCgUCGUCCU---------------CAGcuUGGGCGUUG- -5'
8873 5' -57.1 NC_002484.1 + 39823 0.68 0.492935
Target:  5'- aUCGGCAGCAaGGG-CGAcugguaugccuuuGCCUGCGAUc -3'
miRNA:   3'- -GGCCGUCGUcCUCaGCU-------------UGGGCGUUG- -5'
8873 5' -57.1 NC_002484.1 + 36496 0.72 0.307133
Target:  5'- cCCaGCGGCAGGAGUC--AUCCGCu-- -3'
miRNA:   3'- -GGcCGUCGUCCUCAGcuUGGGCGuug -5'
8873 5' -57.1 NC_002484.1 + 41287 0.72 0.299714
Target:  5'- uCgGGCGGCAGGAcGUCGAugCaGaCGACu -3'
miRNA:   3'- -GgCCGUCGUCCU-CAGCUugGgC-GUUG- -5'
8873 5' -57.1 NC_002484.1 + 48811 0.75 0.204689
Target:  5'- gCCGGCGGgCAauGGAG-CGGAUUCGCGGCa -3'
miRNA:   3'- -GGCCGUC-GU--CCUCaGCUUGGGCGUUG- -5'
8873 5' -57.1 NC_002484.1 + 54052 0.79 0.106794
Target:  5'- gCGGCucGCGGGAcUUGAACCUGCAACa -3'
miRNA:   3'- gGCCGu-CGUCCUcAGCUUGGGCGUUG- -5'
8873 5' -57.1 NC_002484.1 + 54219 1.1 0.000596
Target:  5'- gCCGGCAGCAGGAGUCGAACCCGCAACc -3'
miRNA:   3'- -GGCCGUCGUCCUCAGCUUGGGCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.