Results 1 - 9 of 9 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8874 | 3' | -48.7 | NC_002484.1 | + | 16988 | 0.66 | 0.976443 |
Target: 5'- gCCGAUUGCUGCAUUuccggagccGGUcugCAAcGCa -3' miRNA: 3'- gGGCUAGUGACGUAA---------CCGua-GUUaCG- -5' |
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8874 | 3' | -48.7 | NC_002484.1 | + | 42280 | 0.66 | 0.973559 |
Target: 5'- gCCUGcgCGCUGCugaGGCu--GAUGCu -3' miRNA: 3'- -GGGCuaGUGACGuaaCCGuagUUACG- -5' |
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8874 | 3' | -48.7 | NC_002484.1 | + | 55626 | 0.66 | 0.963382 |
Target: 5'- -gCGAaaUCAuUUGCGUUGGCAUCuc-GCc -3' miRNA: 3'- ggGCU--AGU-GACGUAACCGUAGuuaCG- -5' |
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8874 | 3' | -48.7 | NC_002484.1 | + | 26266 | 0.67 | 0.940873 |
Target: 5'- cCCCGAUCcacagcCUGCGcgacaucccgGGCG-CGAUGCu -3' miRNA: 3'- -GGGCUAGu-----GACGUaa--------CCGUaGUUACG- -5' |
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8874 | 3' | -48.7 | NC_002484.1 | + | 11597 | 0.68 | 0.935488 |
Target: 5'- aCUCGGUCguGCUcGCAUUGGCAacgcuagCAAgguuUGCg -3' miRNA: 3'- -GGGCUAG--UGA-CGUAACCGUa------GUU----ACG- -5' |
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8874 | 3' | -48.7 | NC_002484.1 | + | 34618 | 0.68 | 0.917523 |
Target: 5'- gCCUGA-CGCUGCAUUG-CggCGcgGCg -3' miRNA: 3'- -GGGCUaGUGACGUAACcGuaGUuaCG- -5' |
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8874 | 3' | -48.7 | NC_002484.1 | + | 30490 | 0.71 | 0.819832 |
Target: 5'- uCCCGAUUcCUGa---GGCAUCGAgugGCg -3' miRNA: 3'- -GGGCUAGuGACguaaCCGUAGUUa--CG- -5' |
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8874 | 3' | -48.7 | NC_002484.1 | + | 26820 | 0.73 | 0.714419 |
Target: 5'- gCCgGAUCGCUGCAUgccGGagaAUCGucUGCa -3' miRNA: 3'- -GGgCUAGUGACGUAa--CCg--UAGUu-ACG- -5' |
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8874 | 3' | -48.7 | NC_002484.1 | + | 54374 | 1.14 | 0.002177 |
Target: 5'- cCCCGAUCACUGCAUUGGCAUCAAUGCc -3' miRNA: 3'- -GGGCUAGUGACGUAACCGUAGUUACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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