miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8874 5' -60.5 NC_002484.1 + 395 0.66 0.4825
Target:  5'- cCGgGCCaGAUuuCCGAUCAGGUgGGUGu -3'
miRNA:   3'- uGCgUGG-CUAu-GGCUGGUCCGgCCGC- -5'
8874 5' -60.5 NC_002484.1 + 41744 0.7 0.268208
Target:  5'- cGCGCGCUGGcgauggcuguUGCUGACgCAGGCCaGUGc -3'
miRNA:   3'- -UGCGUGGCU----------AUGGCUG-GUCCGGcCGC- -5'
8874 5' -60.5 NC_002484.1 + 37241 0.7 0.268208
Target:  5'- aAUGCGCaag-GCCaaacACCAGGCCGGCa -3'
miRNA:   3'- -UGCGUGgcuaUGGc---UGGUCCGGCCGc -5'
8874 5' -60.5 NC_002484.1 + 4213 0.69 0.288477
Target:  5'- uCGCGCCc--GCCGAuCCAGGUcuCGGCGu -3'
miRNA:   3'- uGCGUGGcuaUGGCU-GGUCCG--GCCGC- -5'
8874 5' -60.5 NC_002484.1 + 5165 0.69 0.316599
Target:  5'- cGCGCAUCGAUguagcucugcaagGCCGAagcgucguCCAGGauCUGGCGa -3'
miRNA:   3'- -UGCGUGGCUA-------------UGGCU--------GGUCC--GGCCGC- -5'
8874 5' -60.5 NC_002484.1 + 29271 0.69 0.317347
Target:  5'- uCGUACCGAUcCCucuCCAGcCCGGCGg -3'
miRNA:   3'- uGCGUGGCUAuGGcu-GGUCcGGCCGC- -5'
8874 5' -60.5 NC_002484.1 + 50817 0.68 0.362149
Target:  5'- uGCGCAuccgggugaauuucCCGuggaCGACCuGGCCGGCc -3'
miRNA:   3'- -UGCGU--------------GGCuaugGCUGGuCCGGCCGc -5'
8874 5' -60.5 NC_002484.1 + 35501 0.67 0.380579
Target:  5'- uGCGCACaGAUACUGAgCCAGaucagauccagcaGUCGGCa -3'
miRNA:   3'- -UGCGUGgCUAUGGCU-GGUC-------------CGGCCGc -5'
8874 5' -60.5 NC_002484.1 + 2681 0.67 0.381431
Target:  5'- -aGCAUCGAUG-CGACCAuGGCCuGCc -3'
miRNA:   3'- ugCGUGGCUAUgGCUGGU-CCGGcCGc -5'
8874 5' -60.5 NC_002484.1 + 11443 0.7 0.261712
Target:  5'- uUGCGCCacuuuuCCGACCGGcGCuCGGCGg -3'
miRNA:   3'- uGCGUGGcuau--GGCUGGUC-CG-GCCGC- -5'
8874 5' -60.5 NC_002484.1 + 42198 0.7 0.261712
Target:  5'- cCGCGCCGAcGCCGcccugGCCAaGCUGGCc -3'
miRNA:   3'- uGCGUGGCUaUGGC-----UGGUcCGGCCGc -5'
8874 5' -60.5 NC_002484.1 + 1522 0.7 0.255344
Target:  5'- uCGCGCUucUGCCGcuGCCAGGCCaGCa -3'
miRNA:   3'- uGCGUGGcuAUGGC--UGGUCCGGcCGc -5'
8874 5' -60.5 NC_002484.1 + 24772 0.76 0.102311
Target:  5'- cGCGCACCaacaaaaacGCCGGCUcgaGGGCCGGCGu -3'
miRNA:   3'- -UGCGUGGcua------UGGCUGG---UCCGGCCGC- -5'
8874 5' -60.5 NC_002484.1 + 34912 0.75 0.123622
Target:  5'- -aGCGCCGGccagaCGAcacCCAGGCCGGCGa -3'
miRNA:   3'- ugCGUGGCUaug--GCU---GGUCCGGCCGC- -5'
8874 5' -60.5 NC_002484.1 + 30810 0.75 0.130082
Target:  5'- uACGCACCGAUGCCGgaauuccggcaucGCCAccgccacccucGGCCaGGCu -3'
miRNA:   3'- -UGCGUGGCUAUGGC-------------UGGU-----------CCGG-CCGc -5'
8874 5' -60.5 NC_002484.1 + 10927 0.74 0.137583
Target:  5'- aGCGCGCCGcgACCGggaucgGCCucGCCGGUGa -3'
miRNA:   3'- -UGCGUGGCuaUGGC------UGGucCGGCCGC- -5'
8874 5' -60.5 NC_002484.1 + 26101 0.74 0.145095
Target:  5'- cGCGCGCCGA-GCCaGACaccGCCGGCGg -3'
miRNA:   3'- -UGCGUGGCUaUGG-CUGgucCGGCCGC- -5'
8874 5' -60.5 NC_002484.1 + 26459 0.73 0.165536
Target:  5'- cGCGCACCGugcgcgGCuCGGCUuccugccGGCCGGCGc -3'
miRNA:   3'- -UGCGUGGCua----UG-GCUGGu------CCGGCCGC- -5'
8874 5' -60.5 NC_002484.1 + 14659 0.73 0.17901
Target:  5'- cGCGCAuCCGAUACgGGCgCucuGCCGGCGc -3'
miRNA:   3'- -UGCGU-GGCUAUGgCUG-Guc-CGGCCGC- -5'
8874 5' -60.5 NC_002484.1 + 26532 0.72 0.198483
Target:  5'- cCGCAgCCca-GCCGcggGCCAGGCCGGCa -3'
miRNA:   3'- uGCGU-GGcuaUGGC---UGGUCCGGCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.