Results 21 - 34 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8874 | 5' | -60.5 | NC_002484.1 | + | 37241 | 0.7 | 0.268208 |
Target: 5'- aAUGCGCaag-GCCaaacACCAGGCCGGCa -3' miRNA: 3'- -UGCGUGgcuaUGGc---UGGUCCGGCCGc -5' |
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8874 | 5' | -60.5 | NC_002484.1 | + | 41744 | 0.7 | 0.268208 |
Target: 5'- cGCGCGCUGGcgauggcuguUGCUGACgCAGGCCaGUGc -3' miRNA: 3'- -UGCGUGGCU----------AUGGCUG-GUCCGGcCGC- -5' |
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8874 | 5' | -60.5 | NC_002484.1 | + | 11443 | 0.7 | 0.261712 |
Target: 5'- uUGCGCCacuuuuCCGACCGGcGCuCGGCGg -3' miRNA: 3'- uGCGUGGcuau--GGCUGGUC-CG-GCCGC- -5' |
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8874 | 5' | -60.5 | NC_002484.1 | + | 42198 | 0.7 | 0.261712 |
Target: 5'- cCGCGCCGAcGCCGcccugGCCAaGCUGGCc -3' miRNA: 3'- uGCGUGGCUaUGGC-----UGGUcCGGCCGc -5' |
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8874 | 5' | -60.5 | NC_002484.1 | + | 1522 | 0.7 | 0.255344 |
Target: 5'- uCGCGCUucUGCCGcuGCCAGGCCaGCa -3' miRNA: 3'- uGCGUGGcuAUGGC--UGGUCCGGcCGc -5' |
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8874 | 5' | -60.5 | NC_002484.1 | + | 26532 | 0.72 | 0.198483 |
Target: 5'- cCGCAgCCca-GCCGcggGCCAGGCCGGCa -3' miRNA: 3'- uGCGU-GGcuaUGGC---UGGUCCGGCCGc -5' |
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8874 | 5' | -60.5 | NC_002484.1 | + | 14659 | 0.73 | 0.17901 |
Target: 5'- cGCGCAuCCGAUACgGGCgCucuGCCGGCGc -3' miRNA: 3'- -UGCGU-GGCUAUGgCUG-Guc-CGGCCGC- -5' |
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8874 | 5' | -60.5 | NC_002484.1 | + | 26459 | 0.73 | 0.165536 |
Target: 5'- cGCGCACCGugcgcgGCuCGGCUuccugccGGCCGGCGc -3' miRNA: 3'- -UGCGUGGCua----UG-GCUGGu------CCGGCCGC- -5' |
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8874 | 5' | -60.5 | NC_002484.1 | + | 26101 | 0.74 | 0.145095 |
Target: 5'- cGCGCGCCGA-GCCaGACaccGCCGGCGg -3' miRNA: 3'- -UGCGUGGCUaUGG-CUGgucCGGCCGC- -5' |
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8874 | 5' | -60.5 | NC_002484.1 | + | 10927 | 0.74 | 0.137583 |
Target: 5'- aGCGCGCCGcgACCGggaucgGCCucGCCGGUGa -3' miRNA: 3'- -UGCGUGGCuaUGGC------UGGucCGGCCGC- -5' |
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8874 | 5' | -60.5 | NC_002484.1 | + | 30810 | 0.75 | 0.130082 |
Target: 5'- uACGCACCGAUGCCGgaauuccggcaucGCCAccgccacccucGGCCaGGCu -3' miRNA: 3'- -UGCGUGGCUAUGGC-------------UGGU-----------CCGG-CCGc -5' |
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8874 | 5' | -60.5 | NC_002484.1 | + | 34912 | 0.75 | 0.123622 |
Target: 5'- -aGCGCCGGccagaCGAcacCCAGGCCGGCGa -3' miRNA: 3'- ugCGUGGCUaug--GCU---GGUCCGGCCGC- -5' |
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8874 | 5' | -60.5 | NC_002484.1 | + | 24772 | 0.76 | 0.102311 |
Target: 5'- cGCGCACCaacaaaaacGCCGGCUcgaGGGCCGGCGu -3' miRNA: 3'- -UGCGUGGcua------UGGCUGG---UCCGGCCGC- -5' |
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8874 | 5' | -60.5 | NC_002484.1 | + | 54333 | 1.08 | 0.0004 |
Target: 5'- gACGCACCGAUACCGACCAGGCCGGCGa -3' miRNA: 3'- -UGCGUGGCUAUGGCUGGUCCGGCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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