miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8875 3' -59.2 NC_002484.1 + 26582 0.66 0.58134
Target:  5'- cGCCGcucGGCCAgcagCGCG-CGGACCuUGGu -3'
miRNA:   3'- aCGGC---UUGGUag--GCGCuGCCUGG-GCC- -5'
8875 3' -59.2 NC_002484.1 + 33293 0.66 0.550233
Target:  5'- uUGCUGAu--GUUCGCGGCGGAUuuGa -3'
miRNA:   3'- -ACGGCUuggUAGGCGCUGCCUGggCc -5'
8875 3' -59.2 NC_002484.1 + 27863 0.66 0.539973
Target:  5'- cGCCGcACUGUCCGCGGCGaucaACCa-- -3'
miRNA:   3'- aCGGCuUGGUAGGCGCUGCc---UGGgcc -5'
8875 3' -59.2 NC_002484.1 + 27728 0.67 0.4703
Target:  5'- gUGCCGAGCCG--CGCG-CGGgcagaaguuugGCCCGa -3'
miRNA:   3'- -ACGGCUUGGUagGCGCuGCC-----------UGGGCc -5'
8875 3' -59.2 NC_002484.1 + 3600 0.68 0.460713
Target:  5'- gGCUGAACCAguucaugagCGCGGCGcggacGGCCUGGc -3'
miRNA:   3'- aCGGCUUGGUag-------GCGCUGC-----CUGGGCC- -5'
8875 3' -59.2 NC_002484.1 + 42728 0.69 0.38804
Target:  5'- gGCaCGGACCGaacaGCGAUGGGCCUGa -3'
miRNA:   3'- aCG-GCUUGGUagg-CGCUGCCUGGGCc -5'
8875 3' -59.2 NC_002484.1 + 10040 0.69 0.379498
Target:  5'- cGCUGGACUAUCCaGuCGACGucaaagcuGACUCGGu -3'
miRNA:   3'- aCGGCUUGGUAGG-C-GCUGC--------CUGGGCC- -5'
8875 3' -59.2 NC_002484.1 + 27339 0.69 0.371083
Target:  5'- cGCCG-GCguUCCGCuGGCGGAUguUCGGg -3'
miRNA:   3'- aCGGCuUGguAGGCG-CUGCCUG--GGCC- -5'
8875 3' -59.2 NC_002484.1 + 46206 0.71 0.280286
Target:  5'- cGCCGAGCU--UCGCGGCGGuCUCGu -3'
miRNA:   3'- aCGGCUUGGuaGGCGCUGCCuGGGCc -5'
8875 3' -59.2 NC_002484.1 + 43134 0.72 0.248007
Target:  5'- gGCCGAccGCCGUCCauGCGACGc-CCUGGc -3'
miRNA:   3'- aCGGCU--UGGUAGG--CGCUGCcuGGGCC- -5'
8875 3' -59.2 NC_002484.1 + 18150 0.73 0.22445
Target:  5'- cGCUGAGCCAUCCgGCGGCGcauUCCGu -3'
miRNA:   3'- aCGGCUUGGUAGG-CGCUGCcu-GGGCc -5'
8875 3' -59.2 NC_002484.1 + 53997 0.73 0.202821
Target:  5'- aGuuGAGCUAgagCCGCGGaauaGGugCCGGa -3'
miRNA:   3'- aCggCUUGGUa--GGCGCUg---CCugGGCC- -5'
8875 3' -59.2 NC_002484.1 + 26097 0.82 0.055733
Target:  5'- cGCCGAGCCAgacaCCGcCGGCGGugCCGa -3'
miRNA:   3'- aCGGCUUGGUa---GGC-GCUGCCugGGCc -5'
8875 3' -59.2 NC_002484.1 + 55506 1.1 0.000441
Target:  5'- uUGCCGAACCAUCCGCGACGGACCCGGa -3'
miRNA:   3'- -ACGGCUUGGUAGGCGCUGCCUGGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.