Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8877 | 3' | -57.5 | NC_002484.1 | + | 35660 | 0.67 | 0.517931 |
Target: 5'- aCGGCaaAGuCCAGGCaggGUUCGGCGUUGGc -3' miRNA: 3'- -GUCG--UCcGGUUCG---CAAGCCGCAGCUu -5' |
|||||||
8877 | 3' | -57.5 | NC_002484.1 | + | 33149 | 0.68 | 0.444808 |
Target: 5'- gAGCAGGCgGAGCGgccggagguggUGGCGUacCGGAc -3' miRNA: 3'- gUCGUCCGgUUCGCaa---------GCCGCA--GCUU- -5' |
|||||||
8877 | 3' | -57.5 | NC_002484.1 | + | 36700 | 0.68 | 0.417961 |
Target: 5'- gAGCAGGCCAGGa--UCGaGCG-CGAGg -3' miRNA: 3'- gUCGUCCGGUUCgcaAGC-CGCaGCUU- -5' |
|||||||
8877 | 3' | -57.5 | NC_002484.1 | + | 49693 | 0.7 | 0.338744 |
Target: 5'- cCAGCggggAGGCgGAGCGcUUCGGC-UCGGAc -3' miRNA: 3'- -GUCG----UCCGgUUCGC-AAGCCGcAGCUU- -5' |
|||||||
8877 | 3' | -57.5 | NC_002484.1 | + | 14603 | 0.73 | 0.232196 |
Target: 5'- -cGCAGGaCAAGCGUgaccggcucucCGGCGUCGAu -3' miRNA: 3'- guCGUCCgGUUCGCAa----------GCCGCAGCUu -5' |
|||||||
8877 | 3' | -57.5 | NC_002484.1 | + | 36772 | 0.74 | 0.177972 |
Target: 5'- gAGCAGGCUGAGCGUgaugcacagCGGCGcgcCGAAg -3' miRNA: 3'- gUCGUCCGGUUCGCAa--------GCCGCa--GCUU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home