miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8877 5' -53.9 NC_002484.1 + 5364 0.66 0.776183
Target:  5'- --aCCGCuggccgggaacucgGCCAGuuGCGCCUGAaggaucGCCAGg -3'
miRNA:   3'- gaaGGCG--------------UGGUU--CGUGGACU------UGGUCa -5'
8877 5' -53.9 NC_002484.1 + 4339 0.66 0.773113
Target:  5'- aUUCCGCugcgaGCCAgggcggcauccauccGGCGCUUG-GCCAGg -3'
miRNA:   3'- gAAGGCG-----UGGU---------------UCGUGGACuUGGUCa -5'
8877 5' -53.9 NC_002484.1 + 25909 0.66 0.768997
Target:  5'- aCUUCUGCacggcauccGCCAAGCgaccgGCCUGuauaucuGCCAGc -3'
miRNA:   3'- -GAAGGCG---------UGGUUCG-----UGGACu------UGGUCa -5'
8877 5' -53.9 NC_002484.1 + 36779 0.66 0.768997
Target:  5'- ---aCGCGCCGAGCAggCUGAGCguGa -3'
miRNA:   3'- gaagGCGUGGUUCGUg-GACUUGguCa -5'
8877 5' -53.9 NC_002484.1 + 48343 0.66 0.737436
Target:  5'- --gCCGCcagcauccagACCAAGCacaagaGCCUGGGCCuGUg -3'
miRNA:   3'- gaaGGCG----------UGGUUCG------UGGACUUGGuCA- -5'
8877 5' -53.9 NC_002484.1 + 26536 0.67 0.698285
Target:  5'- cCUUCCGCAgcCCAgccgcgggccaggccGGCACCUcGACCGc- -3'
miRNA:   3'- -GAAGGCGU--GGU---------------UCGUGGAcUUGGUca -5'
8877 5' -53.9 NC_002484.1 + 36856 0.68 0.649313
Target:  5'- --gCCGcCGCUGAGCGCCggGAACUGGa -3'
miRNA:   3'- gaaGGC-GUGGUUCGUGGa-CUUGGUCa -5'
8877 5' -53.9 NC_002484.1 + 18261 0.69 0.593317
Target:  5'- -cUCUGCGCCAGGC-Ca-GGGCCGGg -3'
miRNA:   3'- gaAGGCGUGGUUCGuGgaCUUGGUCa -5'
8877 5' -53.9 NC_002484.1 + 49480 0.7 0.547973
Target:  5'- ---gCGCugUGAGCACCUGGaacgaacGCCAGg -3'
miRNA:   3'- gaagGCGugGUUCGUGGACU-------UGGUCa -5'
8877 5' -53.9 NC_002484.1 + 45536 0.7 0.538154
Target:  5'- ----aGCAUCAAGCGCCUuAACCAGc -3'
miRNA:   3'- gaaggCGUGGUUCGUGGAcUUGGUCa -5'
8877 5' -53.9 NC_002484.1 + 34964 0.72 0.43323
Target:  5'- -aUCCGCACCcaccggaAAGC-CCUGGuucGCCGGUc -3'
miRNA:   3'- gaAGGCGUGG-------UUCGuGGACU---UGGUCA- -5'
8877 5' -53.9 NC_002484.1 + 55380 0.72 0.405337
Target:  5'- -aUCCuCGgCGAGCGCCUGGAUCAGc -3'
miRNA:   3'- gaAGGcGUgGUUCGUGGACUUGGUCa -5'
8877 5' -53.9 NC_002484.1 + 9335 0.74 0.310427
Target:  5'- -cUCCGCACCcuGCuucgcuGCCUGAACCAc- -3'
miRNA:   3'- gaAGGCGUGGuuCG------UGGACUUGGUca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.