miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8883 3' -60.8 NC_002484.1 + 27655 0.66 0.450031
Target:  5'- uGCCGGcgGGAggaaaUGCuUGgCCUGGaguggCGCa -3'
miRNA:   3'- -CGGCCuaCCU-----ACG-GCgGGACCga---GCG- -5'
8883 3' -60.8 NC_002484.1 + 40515 0.66 0.450031
Target:  5'- cGCUGGAUGGcUGCCGCau--GUgCGCg -3'
miRNA:   3'- -CGGCCUACCuACGGCGggacCGaGCG- -5'
8883 3' -60.8 NC_002484.1 + 41851 0.66 0.450031
Target:  5'- uGCCGGAggggUGGAUGCuCGUcgagugcggaaUCUGGa-CGCa -3'
miRNA:   3'- -CGGCCU----ACCUACG-GCG-----------GGACCgaGCG- -5'
8883 3' -60.8 NC_002484.1 + 1097 0.66 0.422175
Target:  5'- gGCCGcAUGGGgacucgcGCCGucCCCUGGgUUGCc -3'
miRNA:   3'- -CGGCcUACCUa------CGGC--GGGACCgAGCG- -5'
8883 3' -60.8 NC_002484.1 + 32910 0.66 0.422175
Target:  5'- cGCUGcucagcGcGAcGCCGCCCUGGCcagggUCGCg -3'
miRNA:   3'- -CGGCcua---C-CUaCGGCGGGACCG-----AGCG- -5'
8883 3' -60.8 NC_002484.1 + 42205 0.67 0.361413
Target:  5'- aCCGGGaccgcgccGAcGCCGCCCUGGCcaaGCu -3'
miRNA:   3'- cGGCCUac------CUaCGGCGGGACCGag-CG- -5'
8883 3' -60.8 NC_002484.1 + 16562 0.7 0.246574
Target:  5'- uGCCGGGUGcccGCUgacguucuGCCCUGGUUCGa -3'
miRNA:   3'- -CGGCCUACcuaCGG--------CGGGACCGAGCg -5'
8883 3' -60.8 NC_002484.1 + 17459 0.7 0.234559
Target:  5'- cUCGGAUGuuGAguUGCCGCCCUGGUUg-- -3'
miRNA:   3'- cGGCCUAC--CU--ACGGCGGGACCGAgcg -5'
8883 3' -60.8 NC_002484.1 + 25818 0.71 0.206666
Target:  5'- aGCCGGGguGAaGCCGCCCUucagcgccaGGCuuUCGCg -3'
miRNA:   3'- -CGGCCUacCUaCGGCGGGA---------CCG--AGCG- -5'
8883 3' -60.8 NC_002484.1 + 56185 0.72 0.177024
Target:  5'- aGCCaucaGGuUGGAgucaucgucugUGCCGCCUUGGCUCa- -3'
miRNA:   3'- -CGG----CCuACCU-----------ACGGCGGGACCGAGcg -5'
8883 3' -60.8 NC_002484.1 + 15740 0.73 0.15942
Target:  5'- gGCCGcagcGAUGaCCccagGCCCUGGCUCGCa -3'
miRNA:   3'- -CGGCcuacCUAC-GG----CGGGACCGAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.