miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8883 5' -52.6 NC_002484.1 + 5650 0.66 0.846512
Target:  5'- aCCGCGAAgGCCAGcCGCuc----CUCAg -3'
miRNA:   3'- -GGCGCUU-CGGUC-GCGuuacuuGAGUa -5'
8883 5' -52.6 NC_002484.1 + 36219 0.66 0.846512
Target:  5'- aUCGUGAAGCCgaucaugcAGCgguucgguuucGCAGUGAGCUUc- -3'
miRNA:   3'- -GGCGCUUCGG--------UCG-----------CGUUACUUGAGua -5'
8883 5' -52.6 NC_002484.1 + 41397 0.66 0.809331
Target:  5'- gCCGCGAGcGCCugcaaggaggGGCGUAAUGcAACUg-- -3'
miRNA:   3'- -GGCGCUU-CGG----------UCGCGUUAC-UUGAgua -5'
8883 5' -52.6 NC_002484.1 + 41719 0.67 0.799517
Target:  5'- aCGC-AGGCCAGUGCAA--GGCUCc- -3'
miRNA:   3'- gGCGcUUCGGUCGCGUUacUUGAGua -5'
8883 5' -52.6 NC_002484.1 + 33705 0.68 0.747915
Target:  5'- aCCGCGAcgcauuccuAGCgCAGCGCucUGAAUUUc- -3'
miRNA:   3'- -GGCGCU---------UCG-GUCGCGuuACUUGAGua -5'
8883 5' -52.6 NC_002484.1 + 6323 0.69 0.682034
Target:  5'- uCCGCGAucuuGCCGGCGCucccGAGCcccuUCGg -3'
miRNA:   3'- -GGCGCUu---CGGUCGCGuua-CUUG----AGUa -5'
8883 5' -52.6 NC_002484.1 + 25400 0.69 0.682034
Target:  5'- gUGCGGAGCCgAG-GUAaagGUGAACUCGUc -3'
miRNA:   3'- gGCGCUUCGG-UCgCGU---UACUUGAGUA- -5'
8883 5' -52.6 NC_002484.1 + 51031 0.69 0.670807
Target:  5'- gCCGgGAAGCgguCGGCGCGAUcGGcCUCAa -3'
miRNA:   3'- -GGCgCUUCG---GUCGCGUUA-CUuGAGUa -5'
8883 5' -52.6 NC_002484.1 + 53020 0.69 0.636941
Target:  5'- uUGCGAuaacuGGCacCAGCGCAcugAUGGACUCGa -3'
miRNA:   3'- gGCGCU-----UCG--GUCGCGU---UACUUGAGUa -5'
8883 5' -52.6 NC_002484.1 + 4829 0.71 0.558228
Target:  5'- aCGCGAugcgAGCC-GCGCAggGAGCUgGUu -3'
miRNA:   3'- gGCGCU----UCGGuCGCGUuaCUUGAgUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.