Results 1 - 6 of 6 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8886 | 3' | -50.1 | NC_002484.1 | + | 34162 | 0.66 | 0.938595 |
Target: 5'- cGCCUGACCc-CGAACaGGAAuaaccccAUGCa -3' miRNA: 3'- -UGGACUGGaaGCUUGaCCUUu------UGCGc -5' |
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8886 | 3' | -50.1 | NC_002484.1 | + | 45732 | 0.67 | 0.915054 |
Target: 5'- cACCgagGGCCUugUCuucaagcgGGACUGGcuGAAGCGCGu -3' miRNA: 3'- -UGGa--CUGGA--AG--------CUUGACC--UUUUGCGC- -5' |
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8886 | 3' | -50.1 | NC_002484.1 | + | 3040 | 0.68 | 0.879081 |
Target: 5'- cCCUGAacuCCUcccgcugCGcaGGCUGGAGAAUGCGa -3' miRNA: 3'- uGGACU---GGAa------GC--UUGACCUUUUGCGC- -5' |
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8886 | 3' | -50.1 | NC_002484.1 | + | 55976 | 0.68 | 0.862755 |
Target: 5'- cCUUGACCUUUGGcUUGGuguGACGCu -3' miRNA: 3'- uGGACUGGAAGCUuGACCuu-UUGCGc -5' |
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8886 | 3' | -50.1 | NC_002484.1 | + | 42184 | 0.71 | 0.75672 |
Target: 5'- cCCUGGCCaagcuggcCGAACUGGAAAA-GCa -3' miRNA: 3'- uGGACUGGaa------GCUUGACCUUUUgCGc -5' |
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8886 | 3' | -50.1 | NC_002484.1 | + | 2670 | 0.73 | 0.600282 |
Target: 5'- gACCaUGGCCUgccaGAACUGGAAGGC-CGu -3' miRNA: 3'- -UGG-ACUGGAag--CUUGACCUUUUGcGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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