miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8887 5' -58.1 NC_002484.1 + 2723 0.66 0.55357
Target:  5'- -cCCGCaGcGCGGCGAAUCu-CCGCGu -3'
miRNA:   3'- uuGGCGgCuCGUCGCUUAGcuGGCGU- -5'
8887 5' -58.1 NC_002484.1 + 8296 0.66 0.55357
Target:  5'- uGCCGgCGGG-AGUGGAUCGAUgGCc -3'
miRNA:   3'- uUGGCgGCUCgUCGCUUAGCUGgCGu -5'
8887 5' -58.1 NC_002484.1 + 37025 0.66 0.55357
Target:  5'- ---aGCCGAGCAGgcCGAAcuggagCGACUGCGc -3'
miRNA:   3'- uuggCGGCUCGUC--GCUUa-----GCUGGCGU- -5'
8887 5' -58.1 NC_002484.1 + 11505 0.66 0.529232
Target:  5'- uGCCuGCCGcaguGGCAGCGccAAUCGcagcccccaccuuuGCCGCAu -3'
miRNA:   3'- uUGG-CGGC----UCGUCGC--UUAGC--------------UGGCGU- -5'
8887 5' -58.1 NC_002484.1 + 51036 0.67 0.500157
Target:  5'- cAACUGCCGGGaagcgguCGGCGcGAUCGGCCuCAa -3'
miRNA:   3'- -UUGGCGGCUC-------GUCGC-UUAGCUGGcGU- -5'
8887 5' -58.1 NC_002484.1 + 38344 0.67 0.480835
Target:  5'- cGCCGCCGGcucgacgccGCAGCGGAUgCGAgaaaGCAa -3'
miRNA:   3'- uUGGCGGCU---------CGUCGCUUA-GCUgg--CGU- -5'
8887 5' -58.1 NC_002484.1 + 40983 0.68 0.422389
Target:  5'- cGCCGCCGAGgcccaGGCGcucagggaggaAGUCGcaGCCGCGc -3'
miRNA:   3'- uUGGCGGCUCg----UCGC-----------UUAGC--UGGCGU- -5'
8887 5' -58.1 NC_002484.1 + 54221 0.68 0.403874
Target:  5'- --gUGCCG-GCAGCagGAGUCGAacCCGCAa -3'
miRNA:   3'- uugGCGGCuCGUCG--CUUAGCU--GGCGU- -5'
8887 5' -58.1 NC_002484.1 + 42559 0.69 0.38588
Target:  5'- cGCCGCCGAGgAGCGGGagaaGGCCa-- -3'
miRNA:   3'- uUGGCGGCUCgUCGCUUag--CUGGcgu -5'
8887 5' -58.1 NC_002484.1 + 36708 0.72 0.242566
Target:  5'- aGGCCGaCGAGCAGgccaGGAUCGAgCGCGa -3'
miRNA:   3'- -UUGGCgGCUCGUCg---CUUAGCUgGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.