miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
889 3' -53.4 NC_000899.1 + 1345 0.66 0.772358
Target:  5'- aCCGCCGguggagccgaaaccGGCUGCACcccuGGcCGUcucgucuaAGCCc -3'
miRNA:   3'- aGGCGGC--------------UCGACGUGu---UCaGCA--------UUGG- -5'
889 3' -53.4 NC_000899.1 + 19925 0.66 0.754587
Target:  5'- aUCCGCCGucGGCUGcCGCuauGGccgCGUuuacACCg -3'
miRNA:   3'- -AGGCGGC--UCGAC-GUGu--UCa--GCAu---UGG- -5'
889 3' -53.4 NC_000899.1 + 9579 0.67 0.733198
Target:  5'- -aUGCCGAGUUcgucuuugaaGUACuuGUCGUAACUg -3'
miRNA:   3'- agGCGGCUCGA----------CGUGuuCAGCAUUGG- -5'
889 3' -53.4 NC_000899.1 + 15196 0.67 0.722337
Target:  5'- aCUGCCGGGCUcCAUAGcccCGUAAUCg -3'
miRNA:   3'- aGGCGGCUCGAcGUGUUca-GCAUUGG- -5'
889 3' -53.4 NC_000899.1 + 7135 0.67 0.700347
Target:  5'- cUCCcCCGAGaCUGUAaAAGUCGUcgaAGCUg -3'
miRNA:   3'- -AGGcGGCUC-GACGUgUUCAGCA---UUGG- -5'
889 3' -53.4 NC_000899.1 + 13961 0.67 0.693691
Target:  5'- cCCGUCGGGaugaucgacguacguCUGCACgAAGUCGUAc-- -3'
miRNA:   3'- aGGCGGCUC---------------GACGUG-UUCAGCAUugg -5'
889 3' -53.4 NC_000899.1 + 10444 0.68 0.63308
Target:  5'- uUCCGggucaaCGAGC-GC-CAGGUCcGUGGCCg -3'
miRNA:   3'- -AGGCg-----GCUCGaCGuGUUCAG-CAUUGG- -5'
889 3' -53.4 NC_000899.1 + 12998 0.69 0.610532
Target:  5'- gUCC-CUGAGCUGCAUcaaucuguAGUCGUAGa- -3'
miRNA:   3'- -AGGcGGCUCGACGUGu-------UCAGCAUUgg -5'
889 3' -53.4 NC_000899.1 + 16877 0.7 0.55467
Target:  5'- cUCCaGCCGGuGCUcaGUACAAGUgGUacGACCu -3'
miRNA:   3'- -AGG-CGGCU-CGA--CGUGUUCAgCA--UUGG- -5'
889 3' -53.4 NC_000899.1 + 15573 0.7 0.532717
Target:  5'- cCCGCCGGGCUcuaCACGGGUaacuaCGUcauACCg -3'
miRNA:   3'- aGGCGGCUCGAc--GUGUUCA-----GCAu--UGG- -5'
889 3' -53.4 NC_000899.1 + 10624 0.71 0.47935
Target:  5'- -aCGCaCGuGUUGcCACAGGUCGcAGCCg -3'
miRNA:   3'- agGCG-GCuCGAC-GUGUUCAGCaUUGG- -5'
889 3' -53.4 NC_000899.1 + 29574 0.71 0.448612
Target:  5'- gCCGCCugaGAGCUGCAUAcGccccUCGgcGCCu -3'
miRNA:   3'- aGGCGG---CUCGACGUGUuC----AGCauUGG- -5'
889 3' -53.4 NC_000899.1 + 1022 1.14 0.0006
Target:  5'- gUCCGCCGAGCUGCACAAGUCGUAACCg -3'
miRNA:   3'- -AGGCGGCUCGACGUGUUCAGCAUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.