Results 1 - 10 of 10 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8891 | 5' | -56.5 | NC_002484.1 | + | 43173 | 0.66 | 0.658086 |
Target: 5'- cGACCGggagCGCCUgaugGCU-ACgGUGAUCa -3' miRNA: 3'- -CUGGUa---GCGGGa---CGAgUGgCACUAGc -5' |
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8891 | 5' | -56.5 | NC_002484.1 | + | 17328 | 0.66 | 0.658086 |
Target: 5'- uGACCGUCGUCCaUGCgcCGCCGaUGGcCa -3' miRNA: 3'- -CUGGUAGCGGG-ACGa-GUGGC-ACUaGc -5' |
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8891 | 5' | -56.5 | NC_002484.1 | + | 39094 | 0.66 | 0.658086 |
Target: 5'- aGCCGaaagcaauccUCGCCCUGCUgGaCGaGAUCGa -3' miRNA: 3'- cUGGU----------AGCGGGACGAgUgGCaCUAGC- -5' |
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8891 | 5' | -56.5 | NC_002484.1 | + | 19006 | 0.66 | 0.647199 |
Target: 5'- -uCCGUCGCCCaGUUC-CCGgucaGAUUGa -3' miRNA: 3'- cuGGUAGCGGGaCGAGuGGCa---CUAGC- -5' |
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8891 | 5' | -56.5 | NC_002484.1 | + | 34955 | 0.66 | 0.636297 |
Target: 5'- cACCGgaaaGCCCUgGUUCGCCGgucucUGAUCa -3' miRNA: 3'- cUGGUag--CGGGA-CGAGUGGC-----ACUAGc -5' |
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8891 | 5' | -56.5 | NC_002484.1 | + | 18120 | 0.68 | 0.506662 |
Target: 5'- cGCCA-CGCCCUGUuacggUCugucacgccgacaGCCGUGAUCu -3' miRNA: 3'- cUGGUaGCGGGACG-----AG-------------UGGCACUAGc -5' |
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8891 | 5' | -56.5 | NC_002484.1 | + | 51164 | 0.69 | 0.467098 |
Target: 5'- aGCUguGUCGUCCaUGCUCGCCcaacUGAUCGa -3' miRNA: 3'- cUGG--UAGCGGG-ACGAGUGGc---ACUAGC- -5' |
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8891 | 5' | -56.5 | NC_002484.1 | + | 32989 | 0.7 | 0.428241 |
Target: 5'- uGACCGUCGCCCaGCaugaacgCAUCGUcaaagccugGAUCGa -3' miRNA: 3'- -CUGGUAGCGGGaCGa------GUGGCA---------CUAGC- -5' |
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8891 | 5' | -56.5 | NC_002484.1 | + | 26682 | 0.7 | 0.428241 |
Target: 5'- uGACCAgcaUCGCUCUGCUCcguaggaaaagGCCGUaGUCu -3' miRNA: 3'- -CUGGU---AGCGGGACGAG-----------UGGCAcUAGc -5' |
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8891 | 5' | -56.5 | NC_002484.1 | + | 29835 | 0.73 | 0.259159 |
Target: 5'- aGACCAuucUCGCCCUGCUgGaCGaGAUCGa -3' miRNA: 3'- -CUGGU---AGCGGGACGAgUgGCaCUAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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