miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8892 5' -55.8 NC_002484.1 + 7989 0.66 0.708331
Target:  5'- gGCuUGUGCcaCUGCGCCGG-GCGCugGa -3'
miRNA:   3'- gCG-GCGCGa-GAUGCGGUUaUGCGugC- -5'
8892 5' -55.8 NC_002484.1 + 26137 0.66 0.697627
Target:  5'- -uCCGCGCUCgcggcauccaacUGCgGCCGGUAgugcCGCGCGc -3'
miRNA:   3'- gcGGCGCGAG------------AUG-CGGUUAU----GCGUGC- -5'
8892 5' -55.8 NC_002484.1 + 6191 0.66 0.697627
Target:  5'- gCGCCGcCGC-CUGaguuccuguagUGCuCGAUGCGCGCc -3'
miRNA:   3'- -GCGGC-GCGaGAU-----------GCG-GUUAUGCGUGc -5'
8892 5' -55.8 NC_002484.1 + 10536 0.66 0.686861
Target:  5'- aGCCGCGgaagACGaaCCAGUGCGCGuCGg -3'
miRNA:   3'- gCGGCGCgagaUGC--GGUUAUGCGU-GC- -5'
8892 5' -55.8 NC_002484.1 + 27722 0.66 0.686861
Target:  5'- aGCCGCGCgcgggcagaagUUugGCCcg-AUGCugGa -3'
miRNA:   3'- gCGGCGCGa----------GAugCGGuuaUGCGugC- -5'
8892 5' -55.8 NC_002484.1 + 1524 0.67 0.654296
Target:  5'- aGUCGCGCuUCUGCcgcuGCCAGgccaGCAUGu -3'
miRNA:   3'- gCGGCGCG-AGAUG----CGGUUaug-CGUGC- -5'
8892 5' -55.8 NC_002484.1 + 37067 0.67 0.654296
Target:  5'- gGCCGCGCU--GCGCgAAgcccucguUGCACGc -3'
miRNA:   3'- gCGGCGCGAgaUGCGgUUau------GCGUGC- -5'
8892 5' -55.8 NC_002484.1 + 30985 0.67 0.632467
Target:  5'- uGCCGCGUgaUCUGCGgg---GCGCACc -3'
miRNA:   3'- gCGGCGCG--AGAUGCgguuaUGCGUGc -5'
8892 5' -55.8 NC_002484.1 + 28832 0.68 0.58888
Target:  5'- gGCCGC-CUaucgaUACGCCGAUGC-CAUGc -3'
miRNA:   3'- gCGGCGcGAg----AUGCGGUUAUGcGUGC- -5'
8892 5' -55.8 NC_002484.1 + 18266 0.68 0.578051
Target:  5'- --aUGCGCUCUGCGCCAGgccaGgGC-CGg -3'
miRNA:   3'- gcgGCGCGAGAUGCGGUUa---UgCGuGC- -5'
8892 5' -55.8 NC_002484.1 + 38209 0.68 0.567266
Target:  5'- cCGCUGUGCUCg--GCCugc-CGCGCGa -3'
miRNA:   3'- -GCGGCGCGAGaugCGGuuauGCGUGC- -5'
8892 5' -55.8 NC_002484.1 + 42765 0.69 0.524717
Target:  5'- gGCCaGgGC-CUGcCGCCGGUGgGCACGc -3'
miRNA:   3'- gCGG-CgCGaGAU-GCGGUUAUgCGUGC- -5'
8892 5' -55.8 NC_002484.1 + 38345 0.69 0.503894
Target:  5'- gCGCCGCcgGCUCgACGCCGcaGCGgAUGc -3'
miRNA:   3'- -GCGGCG--CGAGaUGCGGUuaUGCgUGC- -5'
8892 5' -55.8 NC_002484.1 + 3716 0.7 0.483438
Target:  5'- aCGCCaugcaucuaGCGCUUUggGCGCCAGguCGCACu -3'
miRNA:   3'- -GCGG---------CGCGAGA--UGCGGUUauGCGUGc -5'
8892 5' -55.8 NC_002484.1 + 26585 0.73 0.305667
Target:  5'- uGCCGcCGCUCg--GCCAGcaGCGCGCGg -3'
miRNA:   3'- gCGGC-GCGAGaugCGGUUa-UGCGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.