miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8893 3' -60.1 NC_002484.1 + 37694 0.66 0.468141
Target:  5'- cCUGCCugggGCGGCcuG-AUCACCGCc -3'
miRNA:   3'- -GACGGuga-CGCCGucCgUAGUGGCGc -5'
8893 3' -60.1 NC_002484.1 + 35257 0.66 0.458392
Target:  5'- aUGCCGCuuUGCauGGUGcGCGUCcACCGCGa -3'
miRNA:   3'- gACGGUG--ACG--CCGUcCGUAG-UGGCGC- -5'
8893 3' -60.1 NC_002484.1 + 27368 0.66 0.448753
Target:  5'- -cGCCACaccugcGCGGCAuGGCugGUCAgCGCc -3'
miRNA:   3'- gaCGGUGa-----CGCCGU-CCG--UAGUgGCGc -5'
8893 3' -60.1 NC_002484.1 + 41296 0.66 0.420526
Target:  5'- aUGCCgGCUucggGCGGCAGGaCGUCGauGCa -3'
miRNA:   3'- gACGG-UGA----CGCCGUCC-GUAGUggCGc -5'
8893 3' -60.1 NC_002484.1 + 8228 0.67 0.402315
Target:  5'- -aGCCcCUGCGGCgcaucucugAGGCAgCGCUgGCGa -3'
miRNA:   3'- gaCGGuGACGCCG---------UCCGUaGUGG-CGC- -5'
8893 3' -60.1 NC_002484.1 + 51570 0.67 0.393399
Target:  5'- cCUGCUcuuCUGCuGCucGGGCuggaaGUCGCCGCGu -3'
miRNA:   3'- -GACGGu--GACGcCG--UCCG-----UAGUGGCGC- -5'
8893 3' -60.1 NC_002484.1 + 26523 0.67 0.384612
Target:  5'- -aGCCGCggGCcaGGCcGGCAccUCgACCGCGg -3'
miRNA:   3'- gaCGGUGa-CG--CCGuCCGU--AG-UGGCGC- -5'
8893 3' -60.1 NC_002484.1 + 26126 0.68 0.350789
Target:  5'- -gGCauccaACUGCGGCcGGUAgUGCCGCGc -3'
miRNA:   3'- gaCGg----UGACGCCGuCCGUaGUGGCGC- -5'
8893 3' -60.1 NC_002484.1 + 48819 0.68 0.342671
Target:  5'- gUGCUuCUGcCGGCGGGCAauggagcggauUCGCgGCa -3'
miRNA:   3'- gACGGuGAC-GCCGUCCGU-----------AGUGgCGc -5'
8893 3' -60.1 NC_002484.1 + 11503 0.68 0.319134
Target:  5'- cCUGCCGCaGUGGCAGcGCca-AUCGCa -3'
miRNA:   3'- -GACGGUGaCGCCGUC-CGuagUGGCGc -5'
8893 3' -60.1 NC_002484.1 + 42757 0.69 0.311563
Target:  5'- cCUGCCGC--CGGUGGGCAcgCugUGCGa -3'
miRNA:   3'- -GACGGUGacGCCGUCCGUa-GugGCGC- -5'
8893 3' -60.1 NC_002484.1 + 13300 0.69 0.304129
Target:  5'- -aGCCAUUG-GGCGGcCAUCugCGCa -3'
miRNA:   3'- gaCGGUGACgCCGUCcGUAGugGCGc -5'
8893 3' -60.1 NC_002484.1 + 7984 0.7 0.237228
Target:  5'- gUGCCACUGCGcCGGGCGcuggacguucuUCGCUuGCGu -3'
miRNA:   3'- gACGGUGACGCcGUCCGU-----------AGUGG-CGC- -5'
8893 3' -60.1 NC_002484.1 + 36499 0.71 0.231262
Target:  5'- uUGCC-CaGCGGCAGGaGUCAuCCGCu -3'
miRNA:   3'- gACGGuGaCGCCGUCCgUAGU-GGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.