miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8894 3' -56.2 NC_002484.1 + 53517 0.66 0.724883
Target:  5'- gCUGGGAacgGGAagguCCGCugguauGGCugGGCCu -3'
miRNA:   3'- gGACCCU---CUUgau-GGCG------CUGugCCGG- -5'
8894 3' -56.2 NC_002484.1 + 35983 0.66 0.714454
Target:  5'- --cGGcGAGGACgacgACgGCaACGCGGCUg -3'
miRNA:   3'- ggaCC-CUCUUGa---UGgCGcUGUGCCGG- -5'
8894 3' -56.2 NC_002484.1 + 32713 0.66 0.682746
Target:  5'- aCCUGGauGAGCUG-CGCGAUGCgcugcuGGCCu -3'
miRNA:   3'- -GGACCcuCUUGAUgGCGCUGUG------CCGG- -5'
8894 3' -56.2 NC_002484.1 + 11793 0.67 0.676345
Target:  5'- gCCUGGGggccgcucagauuccGGAACUGguCUGCGGuCAC-GCCa -3'
miRNA:   3'- -GGACCC---------------UCUUGAU--GGCGCU-GUGcCGG- -5'
8894 3' -56.2 NC_002484.1 + 5665 0.67 0.629106
Target:  5'- gCCUcGGGGcGAuagACCGCGAa--GGCCa -3'
miRNA:   3'- -GGA-CCCU-CUugaUGGCGCUgugCCGG- -5'
8894 3' -56.2 NC_002484.1 + 17607 0.68 0.575517
Target:  5'- --cGGGuAGccuCUACCGaGACGCGGCUu -3'
miRNA:   3'- ggaCCC-UCuu-GAUGGCgCUGUGCCGG- -5'
8894 3' -56.2 NC_002484.1 + 41739 0.69 0.512735
Target:  5'- gCUGGcGAuGGCUGuuGCuGACGCaGGCCa -3'
miRNA:   3'- gGACC-CUcUUGAUggCG-CUGUG-CCGG- -5'
8894 3' -56.2 NC_002484.1 + 29127 0.7 0.462659
Target:  5'- gUCUGGcuGAACUACCGaaauGGCGCaauGGCCa -3'
miRNA:   3'- -GGACCcuCUUGAUGGCg---CUGUG---CCGG- -5'
8894 3' -56.2 NC_002484.1 + 43171 0.71 0.397167
Target:  5'- aCC-GGGAGcgccugauGGCUACgGUGAuCAUGGCCg -3'
miRNA:   3'- -GGaCCCUC--------UUGAUGgCGCU-GUGCCGG- -5'
8894 3' -56.2 NC_002484.1 + 31006 0.71 0.397167
Target:  5'- gCUGGGGGAGCcucucaaaaaUGCCGCGugAUcugcggGGCg -3'
miRNA:   3'- gGACCCUCUUG----------AUGGCGCugUG------CCGg -5'
8894 3' -56.2 NC_002484.1 + 38182 0.75 0.258393
Target:  5'- cCCUGGuGGuGAAcCUGCCGCGucGCAUGGCg -3'
miRNA:   3'- -GGACC-CU-CUU-GAUGGCGC--UGUGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.